Apaloderma vittatum (bar-tailed trogon): 104269455
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Entry
104269455 CDS
T08559
Symbol
LSM1
Name
(RefSeq) LOW QUALITY PROTEIN: U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104269455 (LSM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avit03019
]
104269455 (LSM1)
Messenger RNA biogenesis [BR:
avit03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104269455 (LSM1)
mRNA degradation factors
5'-3' decay
Lsm complex
104269455 (LSM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
104269455
NCBI-ProteinID:
XP_009864679
LinkDB
All DBs
Position
Unknown
AA seq
119 aa
AA seq
DB search
MSSAKANVKFVRPRTPIVFSLDHAANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLL
GEIDLEKESDTPLQQVSIEEILEEQRVEQQAKQESEKLKVQALKERGLSVPRADTLDEY
NT seq
360 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcggccaaagccaacgtcaagtttgtgagacctcgaacaccgattgtgttctct
ctcgatcacgcagcaaacttggtgttgcaccagactgtggagcgcatccacgtgggcaag
aagtatggagacatcccgcgaggcatcttcgtagtgagaggcgagaacgtcgttctgctg
ggggaaatagacctggagaaggagagcgacacgcctctgcagcaggtctccatcgaggag
atcctggaggagcagcgagtggagcagcaggccaagcaggagtcggagaagctgaaggtg
caggcgctgaaggagcggggcctctccgtcccgcgggcagacaccctggacgagtactag
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