Apaloderma vittatum (bar-tailed trogon): 104271457 Help Entry 104271457         CDS       T08559                                  Symbol BRIP1 Name (RefSeq) Fanconi anemia group J protein   KO K15362   fanconi anemia group J protein [EC:5.6.2.3] Organism avit  Apaloderma vittatum (bar-tailed trogon) Pathway avit03440   Homologous recombination avit03460   Fanconi anemia pathway Brite KEGG Orthology (KO) [BR:avit00001]  09120 Genetic Information Processing   09124 Replication and repair    03440 Homologous recombination     104271457 (BRIP1)    03460 Fanconi anemia pathway     104271457 (BRIP1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:avit03400]     104271457 (BRIP1) Enzymes [BR:avit01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      104271457 (BRIP1) DNA repair and recombination proteins [BR:avit03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     BRCA1-B complex      104271457 (BRIP1)    FA (Fanconi anemia) pathway     Downstream FA components      104271457 (BRIP1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DEAD_2 Helicase_C_2 DEAD ResIII HBB Motif Other DBs NCBI-GeneID:  104271457 NCBI-ProteinID:  XP_009864468 LinkDB All DBs Position Unknown AA seq 1263 aa AA seqDB search MPSDVSEYTIGGVKIIFPCKAYPSQLAMMNAIVKGLNNRQHCLLESPTGSGKSLALLCSA LSWQQALYEKSVLTSSCEKKDRKPETSPPCRCTCHSQSKSEEAATGVTPGAASSSVINCE AGSSVKPGSPLTNTECKENETLASKLSAKKKLSLCDGENGDFRVDRKRIRPLETEQQVRK RPCFAKGVQLVDALEVYHQRKNGELIVHSEKSVKLTTFSPKTSSGPCTECSCSSGKEADK DAGNTKKKENGDKLFVPKIFFGTRTHKQISQITRELKRTAYSGVPMTILSSRDYTCIHPM VSSSSSRNEMCVELLEGKHGKSCLYYHAVHKLDEHHTLQSAHGMYQAWDIEDLVRLGKKL RACPYFAARELMVGADIVFCPYNYLLDPQIRESMEINLKGQVVILDEAHNIEDCARESVS YSVTESQLRAAREELDSMVNSNIRQKDHEPLRAVCCSLTNWLHESSSQLVERGYESSCKV WSGKEMLEILHNMGITVITFPILQKHLATVLEKEEKISVLGREELVTIPIVSPATQMMLK GLFMVLWCLFKDNSRFAEDYRVALQQTYAWMNENQPDVSDTSAFFTQPKRKRNLRQKTAV HVLNFWCLNPAVAFSNLNDVRTIVLTSGTLSPMDSFSSELGVKFSIQLEANHIIRNSQVW VGTVGAGPNGQKLCATFQHAETFAFQDEVGALLLSVCQTIGQGILCFLPSYKLLDKLKDR WMHTGLWRNLELVKTVIAEPQGGAKSDFDELLKIYYDAIKCKGEKDGALLIAVCRGKVSE GLDFCDENARAVITIGIPFPNVKDLQVELKRKYNDQHKNTRGLLPGSQWYEIQAYRALNQ ALGRCIRHRNDWGALILVDDRFRNNPNKYITGLSKWIRQQIKHHENFSSALESLQEFALR NQKGIDCSSQGSSEFLHVPSNSKDLPQASQQEATIHLSPDVPAKSEEPNLDSEINFTKTV RSVNPTASNQPSGQNVDVESHSHHVTQRRKHLDSTPQMPATKGEREKIGWTNADTTEEQR CCQPLASTPLPVAENCTSTASSKQKNVNRAGELTAGINQCQSSLISEHKPSVPESCFETT GFPVTSTEAPVAEEHPDKLQAQAEPCGELPSAGGKSELPVLNVSTEAEDEDESIYFTPEL YDDDVESEEEKTRPLVPACSPDEKRIECGNSTVADDLVAINASETLNMTNKMIDEDEGRS TSLHGIMQNQKSKNSAVNNVEMTSGVEAEQIASQEMDTKKRKISLSRSRNKGVSSFLLNN TSA NT seq 3792 nt NT seq  +upstreamnt  +downstreamnt atgccttccgatgtgtcagaatacactattgggggagtgaagatcatattcccttgcaag gcttacccttcacagcttgctatgatgaatgctattgttaagggcttaaataacaggcaa cactgtttgttggagagtcctacaggaagtggcaaaagcttggcgttactgtgttctgcg ttatcatggcagcaggctctgtatgagaaatcagtgcttacctcatcatgtgaaaagaaa gacagaaagccagagacctcgccaccctgtcgctgcacgtgtcactcccaatccaagagc gaagaggctgcaacaggtgtgactcctggtgctgcttcttcttctgttattaattgtgaa gcaggaagttctgtgaaacctggaagccctctgacaaacacagaatgtaaggaaaatgaa acgctagcttcgaaactgtctgccaaaaaaaagttgtctctatgtgatggtgagaatggt gattttcgagtagacaggaaaaggattcggcctctagaaactgagcagcaggttcgaaaa cgtccttgttttgcgaaaggggtgcagctggttgatgccttagaagtttatcatcagaga aaaaacggagagctgattgttcactctgaaaaaagtgtgaaactcactacattttctcct aaaacatcttctggcccttgcactgagtgttcctgctcatctggaaaagaagcggataaa gatgctggtaacacaaagaagaaagaaaatggagataagttatttgttcccaaaatattt tttggaacacgaacacacaagcaaatatcgcagattaccagggagctgaagagaacagcg tattccggtgtccctatgacaattctttccagccgggattatacctgtattcatccgatg gtatccagtagtagcagcaggaacgaaatgtgtgtggaactgctggaaggaaaacacggc aagtcctgtctttactatcatgctgttcataaactcgatgaacaccataccctacagtct gcacatgggatgtatcaggcttgggacattgaagatctagtgaggctgggaaagaagctt cgtgcctgtccatattttgcagccagagaattaatggtgggcgcagatattgtgttttgt ccttacaattatctcctcgacccacagatacgggagagcatggaaattaacctaaaaggc caggtagtcattttagatgaagcccataatattgaggactgcgctcgtgagtcagtgagc tacagtgttacagaaagtcaactaagagctgctcgcgaagaactcgattccatggtcaac agcaacatcagacagaaggatcatgagcccctacgagctgtgtgctgctctttgacaaac tggctacatgagagctccagtcaactagtagaaagagggtatgaaagttcctgtaaggtt tggagcggaaaagaaatgctcgagattttacacaacatgggaataactgttattactttt cccattttacagaaacatcttgctactgtcctggaaaaagaagaaaaaatatcggtgctt ggtagagaggaacttgttacgatcccgattgtgagccctgccactcagatgatgctgaaa gggttattcatggttctgtggtgtctttttaaagataacagcaggtttgcagaagattac agagttgctctacaacaaacttacgcttggatgaatgaaaaccagcctgatgtttcagat acaagtgctttttttacacagcccaagcgtaaaagaaatttgcggcagaaaacagcagtc cacgtgcttaatttctggtgcttgaatcctgctgtggctttttcaaacttgaatgatgtt agaacaattgttctgacatctggtacgctctctccaatggattcattttcttcagagctc ggcgtgaagttttctattcagttggaagcaaatcacattattcgcaactcccaggtttgg gttggcaccgttggagcaggccctaacggtcagaagctgtgtgccacgttccagcacgca gagacatttgcgttccaagacgaggtgggagcgcttctgctttcagtgtgtcaaacaatt ggccaaggaattttgtgctttttgccatcctataagctgttggacaaactgaaagatcgc tggatgcacaccggcttgtggaggaacctggagctggttaagacagtcattgcagagcct caaggaggggcaaagagtgactttgatgaactgctgaaaatatactatgatgcaataaaa tgtaaaggagaaaaagatggagcactgcttatagctgtgtgcagaggaaaagttagcgaa ggcttggatttctgtgatgagaatgcccgtgcagttataaccataggtattccgtttcca aatgtgaaagaccttcaggttgagttaaagaggaagtacaacgaccagcacaaaaataca agaggccttttaccaggcagtcagtggtacgaaattcaggcttatagggctctgaaccaa gccctgggaaggtgtataagacataggaatgactggggtgctcttattttagttgatgac cgcttccggaataacccaaataagtacataactggattgtccaaatggatacgtcagcaa atcaagcaccatgaaaatttcagtagcgcacttgagtccttgcaggagtttgcgctaaga aaccagaaaggcatcgactgttcgtcacagggcagcagtgagtttctccacgtaccttca aattcgaaagacctgccacaagcctctcaacaggaggcaactattcatctgtcaccagat gttcctgctaaaagtgaggagccaaatttggattcggaaattaattttactaaaaccgta cgctcagttaatcctacagcgtcaaatcagccaagtggccagaacgttgatgtagagagt cattctcaccatgtaacacagagaagaaaacatttggactccacgccccaaatgccagca actaaaggagagagagagaagattggttggactaatgctgatactaccgaagagcagcgc tgctgtcagccgctggcttcaacacctttgcctgtcgccgagaactgcacgtccacagcg agtagcaaacaaaagaatgtgaatagggctggtgaacttactgctggtataaatcagtgc cagtcatcattaatttcagaacataaaccaagtgtaccagaatcgtgtttcgaaacaact ggttttccagttacaagtactgaggctccagttgctgaggagcatcctgataagctacag gctcaggctgagccctgtggtgagttgccatcagcaggagggaaatctgaacttccagtg ttaaatgtctccacagaagctgaagatgaggatgaaagtatctacttcacaccagaactc tatgatgatgatgtagaatcagaggaagagaaaaccagacctctggttccagcctgtagt ccagatgagaagcggattgaatgtggaaactccacagtcgctgatgatcttgttgcaatc aacgcctcagaaacactaaatatgacaaataaaatgattgatgaggatgagggcagaagc acaagcttacatggaataatgcaaaatcagaagagtaagaatagtgcagttaataatgta gagatgactagtggagtagaagcagagcagatagcatctcaagagatggacaccaaaaaa cggaaaatcagtctttccagatcacgaaataaaggtgtgtcatcttttctgttgaacaat actagcgcatag

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