Apaloderma vittatum (bar-tailed trogon): 104271639
Help
Entry
104271639 CDS
T08559
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104271639 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
avit03041
]
104271639 (DDX42)
Enzymes [BR:
avit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104271639 (DDX42)
Spliceosome [BR:
avit03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
104271639 (DDX42)
Complex B
104271639 (DDX42)
Complex C
U2 SnRNP specific factors
104271639 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
104271639
NCBI-ProteinID:
XP_009864663
LinkDB
All DBs
Position
Unknown
AA seq
891 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENSDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQAAAAAKGVPGFTSTG
NLSSVPTFPSVGAQGFNNTNASANSREGGGVAASGLFFGVVRERYSDNRNSRHNEVPRRG
EGSGRYNDVQRHDVQRHDMQRHGEGGGGRHNDAYRHGEGRHGDNHRHSESRHFADAGGGN
RNNSENRNSGEGRNNENRNGENRKDANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtactaagagaggctttggttttggtggatttgcc
ataacacctgggaaaaaagaggagcctaagctctctcagcagtctcatagtgcttttgga
acagccggttcttctgctgcatttgcgaaatcaggacctcctcagctgccttctttctac
aaaattgggtcaaagcgagcgaattttgacgaagagaatgcgtactttgaggatgaagag
gaagattctagcaatgtggaattgccgtacattcccgcagagaattcccccactcgccag
cagtttcattccaaatcagcagactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagatatgaagagacttgaagataaagacaaagaa
aaaaagaacgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggctgaaaaccccactgctggcgtggtccaagaagaggaagaggataac
ctggagtacgatagtgatgggaatccaattgcaccgtccaaaaagatcattgatcctctt
ccacctattgaccattcagagattgaatatccaccctttgagaaaaatttctacgatgag
catgaggagatcaccagtctcaccccgcagcaagtggtggagttacgtcataaactaaat
ctccgggtctctggtgctgctcctccaaggcctggcagtagttttgctcattttgggttt
gatgaacaacttatgcatcaaattaggaaatccgagtatacccagcccactcctatacag
tgtcagggtgttccagttgccctaagtggcagagatatgattgggatagctaagactgga
agtggcaaaacagcagccttcatctggccgatgttgattcacatcatggatcagaaggag
cttgaaccgggggatggtcccatcgcagtgatcgtctgcccaaccagagagctctgccaa
cagatccattctgaatgtaagcgctttggtaaggcgtacaatctgcgctctgtagctgtg
tatggaggaggaagcatgtgggagcaagccaaagccctccaggagggagcagagatagtt
gtctgcacaccaggtcgtttgatcgatcacgtgaaaaagaaagctacaaacctccagaga
gtcacctaccttgtgtttgatgaagctgacagaatgtttgatatgggttttgaatatcag
gtcagatcgattgcgagccacgtgcgtcctgacagacagactctcttgttcagtgccact
ttccggaagaagattgagaaattggcccgagatattttgatcgacccaattcgtgttgtg
cagggagacattggagaggcaaatgaagacgttacgcaaattgtggagattttcccctct
ggccccagcaaatggaactggctgactcgacgcctcgtggagttcacatcttctgggagc
gttctcctgtttgtcaccaagaaggcgaacgcagaagagttggccaataacctcaagcag
gaggatcataatctggggctgcttcacggggacatggaccagagtgagaggaataaagtc
atttcagaatttaagaaaaagggaatcccgatactggtagctactgacgtggcagctcgt
gggttggatattccttccattaagacagtcattaattacgatgtggctcgggacatagat
acgcacacccatagaattggccgtactggcagagcaggcgagaagggagttgcctacact
ctgctgactcccaaagacagtaacttcgctggtgatcttgtcaggaatctggaaggtgct
aatcaacatgtttccaaagagctgctggatctagcaatgcagaatccatggttccggaaa
tcacgtttcaaaggaggaaaaggcaagaagctgaatattggtggtggtggcttaggatac
cgtgaacgtcccggtctgggatcagaaaattctgatcgtggaaacaacaacagtgtgatg
agtaactacgaggcgtacaagccatccactggggcgatgggagacaggctcacggcaatg
aaagcagcttttcaggccgccgcagcggcaaagggcgtcccaggtttcaccagcacgggg
aatttgagcagcgttcccaccttcccaagtgtcggagcacagggcttcaacaacacgaat
gccagcgccaacagtcgagaaggcggcggcgttgccgcttctggccttttttttggggtt
gtcagagaacgctacagcgacaaccggaacagtcgccacaacgaggtcccacgccgtgga
gagggcagcggtcgctacaacgatgtgcaacgccacgatgtgcaacgccacgacatgcaa
cgccacggagaaggaggaggcggtcgccacaatgacgcttaccgccacggagagggccgg
cacggtgacaaccatcgtcacagcgagagccggcacttcgccgatgcgggcggcggcaat
cgcaataacagcgagaacaggaatagcggtgaagggaggaacaacgagaacaggaatggc
gagaacaggaaggatgccaacagccgggacaacaagacagatggttttgctgtccccgag
cccccaaaacgtaagaagagccggtgggacagttaa
DBGET
integrated database retrieval system
