Apaloderma vittatum (bar-tailed trogon): 104271906
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Entry
104271906 CDS
T08559
Symbol
PDCD11
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
avit03009
]
104271906 (PDCD11)
Ribosome biogenesis [BR:
avit03009
]
Eukaryotic type
90S particles
Other 90S particles
104271906 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
Spt6_S1
OB_RRP5_4th
Suf
HAT_PRP39_C
TPR_14
OB_RRP5
HAT_Syf1_CNRKL1_C
TPR_19
TPR_15
ARM_TT21_5th
ARM_TT21
TPR_CcmH_CycH
TPR_12
Motif
Other DBs
NCBI-GeneID:
104271906
NCBI-ProteinID:
XP_009865038
LinkDB
All DBs
Position
Unknown
AA seq
1844 aa
AA seq
DB search
MTSIEENFPRGGIQKKPTERKTLNLKLERDNLFAVHHEEQSQKRKRSQKDQGNQKKFKTD
KTTTAKDNVVDIEPNXGLWINAVCEGMLFLGCIKEVSDYELVISLPNGLLGFVPVTQICD
AYSKMLSNQVAQGELLEDLNSLLDMYYPGTLVRCIVTSVEKSADGRRSIKLSIDPKKVNN
GLNASALASGMLLSGFVSSVEDHGYLIDIGVGGTHAFLPRQKAQNYIKAVKRGPDLKIGQ
NLNCVIVEVKNEGRVVHLSVDRSDVAASLATERQNWTLSNLLPGLVVKARVQKVAPLGIK
LNFLSSFTGIVDFMHMDPEKSMNYAPDQMMKACILSVHPTSKVVRLTLRQAFLHPGGSPN
QLSNDRMGAVVEESTVKAFYKQFGAFFELDDGALAFARLKHLSKNRKSFKPGAFKTGCKH
KCRIIDYSLMDEMCIVSLKYQIIEARFLQYQDIHTGDVVQGKVFALKSIGMQVKVTGGIK
GLVPSMHLADVILKQPEKKYSIGDEVKCRVLECNPAGKKLILTLKRSIVQSKLPILSSYE
DAKPGVITHGFVVCAREFGCIVKFYNDVKGLVPKNELSSEPISSPEKVFHEGQVVKVMVL
KCEPQQERLLLSFRLSGEPALEGRKEGTPKKKQEVKYQIGEMVDVKVLKKKDNGLEVSIL
EGEGNVVASIPTMHLSDFITTCKLLWHCLQEGDVLPRVMCLSHKGERIILSRKSAVISAV
QEEQVVRNFSEIQPGMLLTGYVRNVMPFGVFVEFPFGVTGLAPKMSMSDKFVTDTKDHFV
VGQTVIAKVMSIDEEKQRVLLNLKVSECSSGDSAAESFALLNQYFNEMIEIRSLLRKRGE
PSMAQGLCELVPGKELQLVVQDVKEDGSALFSGRGVAGLXXXXXXXXXXYHLGDKNIVPG
EKTKAMVLHVDALTSKVYVSLREQLLKQRTKQWLTENSQHSAIVQHIAEEFAIVSLEKSQ
LAAIPIASHFNDTFRFDSEKLKVGQTISATLKTVKVNVCGVLLALQGSVKKNVFVRVRNE
SETALEDMLPTVKHSLSLGDVVTGTVKSVKPTHVTVAIDDKLTGSIHASRILDEVPIGSF
PTYTLKAGQKVTARVIGGRDVNTHRYLPITHPHFTQTVPELSIRPSEIEGKVTAMLTLEE
ENALKKPGLYSVGQTVTCFVKKYNILKNWLEVEVTPDIRGRVPHLLLSLNTKVLKHPEKS
FKNGQAITATVTGTDVTKTNLCLSLTGIQSLEQGTITVGMVKKMTPHIGLTIALPGGKTG
KASIFHLNDTYTENPLGDFKVGKIVRCYILFNKNGKIQLSLRQSRLNPKSNSKVEDVEIT
CIKDVKKGQLVRGYVKSVTQSGVFFGLSPSLHGRILFHNVSPYFVQKHSLYEKYLPEGKL
LTAKVLSVSEKGKHIELSLLPEDTGMPCILPESLGLPRYDAEEEKRKAGDTEKREELKMK
AKRRRGNSESEQEAKPKKRKICPTDENDSGIEVYYREEEDDDQEEEAAERKPKIKKPGEA
PRLRVSMSFTWDEDMNAMDTAVLNQKEESSESEEEEDPQSKMKKQTKKEKELEKQKKEKE
LCKLEAALMDPSRQPQSADDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALK
TICFREEQEKLNVWVALLNLENMYGSEETLMKVFERAVQYNEPLKVFQHLCDIYANSEKY
KQAEELYHTMLKRFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALATKEHVDVISRF
AQLEFRFGDSEHAKALFESTLSSYPKRTDIWSIYMDIMIKHGSQKEVRDIFERVIHLSLA
PKKMKFFFKRYLDYEKKFGTTESVLAVKRAALEYVETKSSLAVA
NT seq
5535 nt
NT seq
+upstream
nt +downstream
nt
atgacatccatagaagaaaactttcctcgagggggtatccagaaaaaacccacggagaga
aaaacactcaacctaaagctagagcgggacaatttgtttgctgttcaccatgaagaacaa
tcccaaaaaagaaaaaggagccaaaaggatcaaggaaaccagaaaaagttcaagacagac
aaaacaaccactgctaaagacaacgttgtagatattgaaccgaattgaggtttgtggata
aatgcagtctgtgaggggatgctgttccttggttgtataaaagaggtcagtgactatgaa
ctagtcatcagcttgcccaacggacttctaggatttgtgccggtcacgcagatctgcgat
gcctacagcaaaatgctgagcaatcaggtggcccaaggagaactcctggaggacttgaat
tcgctcttggacatgtattacccagggacactggtgaggtgcattgtgaccagtgttgag
aaaagtgctgacggacgtcggagtatcaaattatcgattgatcccaagaaggtcaataat
ggtctgaatgcttcagcactagcatcgggcatgctgctctctggctttgtgtctagtgtg
gaagaccatggctacctcattgatattggagttggtgggactcatgctttcctgcctcgt
caaaaagcccaaaattacatcaaagcagtcaagagagggcctgacttgaaaataggccaa
aacctgaactgtgtcattgtggaagtaaagaacgagggaagagtggtccatttgtctgtt
gatcgatcagatgttgctgcatctcttgcaacagagcgacagaactggacactttctaat
ttattgccagggctagtggtgaaagctcgagtgcagaaggtggccccacttgggatcaaa
ctgaactttctatcttccttcaccggcattgtagatttcatgcacatggacccagagaaa
tccatgaactatgctccagatcaaatgatgaaagcttgcatcctctctgtccaccccaca
tccaaggtggtgcggcttactctacggcaagccttcctccaccctgggggatccccaaac
cagctctccaatgatcgcatgggggcagtagtggaggaatcaacagtgaaagctttctac
aaacagtttggtgccttctttgagcttgatgatggtgctcttgcgtttgcacgattgaaa
catctttcaaaaaacagaaaatcctttaaacctggggcatttaagacaggatgcaaacat
aaatgtcggatcattgactacagcctgatggatgagatgtgtattgtatctctgaagtat
cagattattgaagcacggtttctgcaataccaggatatccacacaggggatgttgtgcag
ggcaaagtgtttgctctgaaatctattgggatgcaggtgaaagtgactggtgggattaaa
gggctcgtgccgtccatgcatcttgctgatgtgattctgaagcaacctgagaagaagtac
agcataggagatgaagtcaagtgtcgggtgctagagtgcaatcctgcaggaaagaagctg
atccttactctaaagagaagtattgtgcaatcaaagcttccaatcctctccagttatgaa
gatgcaaaaccaggtgtgatcacacatggatttgtggtgtgtgcaagggaattcggctgc
attgtgaagttctacaatgatgtgaagggtctggtacctaagaatgagctgagctcagaa
cccatatcttctccagagaaagtcttccatgaaggccaggttgttaaagtaatggtcttg
aaatgtgagccccagcaggaaagactcttgttgtccttcaggttgtcaggcgagcctgcc
ctggagggcaggaaggaaggtaccccaaagaagaaacaggaagtgaaatatcaaatagga
gagatggttgatgtgaaagtcttgaagaagaaagataacggactagaggtttccatcttg
gaaggtgaaggcaatgttgtagcctcgattcccacaatgcacctctctgacttcatcact
acctgcaagctcctgtggcattgtcttcaagagggagatgtcttgcccagagttatgtgc
ctaagtcacaagggggagcgtattatcttgagcagaaagtctgcagtgatttctgctgta
caggaggagcaagttgtgagaaatttctctgaaatccagcctgggatgctgttaactggt
tacgtgaggaatgtgatgccctttggagtgtttgtggagttcccttttggtgtgacagga
ctggcgcccaaaatgagcatgagtgacaaatttgtgacagacaccaaggaccactttgtg
gtgggacagactgtgattgcaaaggtcatgagcattgatgaggagaagcaacgtgtgctc
ctcaatctgaaggtgtcagagtgcagctcaggcgattctgctgcagaaagctttgccctg
ctgaatcagtatttcaacgagatgatagaaatcaggagcttgttgagaaaaagaggggag
cccagcatggcccaaggcctttgtgagctggtgcctgggaaggagctgcagctggttgtg
caggatgtgaaggaggatggctcagcactgttcagtggcaggggtgtggcagggctnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnctaccatttgggagacaaaaatattgttcctggt
gagaagaccaaggcaatggttcttcatgtggatgccctcacatccaaggtgtacgtttct
cttcgggagcaactgttaaaacaaagaaccaagcaatggctcacagagaactcccagcac
tctgccatcgtgcagcacatagcagaagaatttgccatcgtgtctttggaaaaaagccag
ctggcagctatccccatagcatctcacttcaatgacaccttccgctttgactcagaaaaa
ctgaaggtgggacaaacaatctctgcaaccttaaaaacagtgaaggtgaatgtctgcgga
gtcttgttagcactacaaggctcagtgaagaagaatgtttttgtaagggtccggaatgaa
tctgaaacagctttagaagacatgcttcctactgtgaaacactcgctttccctgggggat
gttgttactggtactgttaaatctgtcaaaccaacccatgtcacagttgctattgatgac
aagctgacaggttcaatccatgcgtcccgaattctggatgaagtgcccataggctctttt
ccaacatatactctgaaagctggacagaaggtgactgctcgagtcattggaggcagagat
gtgaatactcacaggtacctgcccatcactcatccgcacttcacccagactgttccagag
ctcagcattcgaccaagcgaaatagaagggaaagtcacagcaatgctgactcttgaagaa
gagaatgccctcaagaaacctggactctacagtgttggacagacagtcacctgttttgtg
aaaaagtataacatcctcaaaaactggctggaggtagaagtcacccctgacattcgagga
agagttcctcatctgctgttgtctcttaacaccaaggtcttaaaacatccagaaaagagc
ttcaaaaatggccaggcaataacagctacagtgactggaacagacgtcaccaaaacaaac
ctctgcttgtcactcacaggaattcagtcactggagcagggtaccatcactgtaggcatg
gtaaaaaagatgactccacacattggtttgaccattgcactgccaggtgggaagactggc
aaagccagcatctttcacctgaatgacacatacacagagaatcctctgggtgacttcaaa
gttggcaagattgtgaggtgttacatcctcttcaataagaatggcaaaatccagttatct
ctccggcaatcccggctaaatccaaagagcaacagcaaagtggaggatgttgaaataaca
tgtattaaggatgttaaaaaaggccaactagtgagaggctatgtcaaatcagtaactcag
tcaggtgtattctttggcttgtccccctctcttcatggacgaatcctgttccacaatgtt
tccccttactttgtacagaaacattccttatatgaaaagtacctgcctgaaggaaagctg
ctcactgccaaggtgcttagtgtaagtgaaaaaggaaagcatattgagctctctctcctg
cccgaggacactggaatgccatgcatcttgcctgaatccctaggcctaccacgatatgat
gcggaggaagagaagagaaaggcaggtgatacggaaaagagagaagagcttaagatgaag
gcaaaacggagaagaggaaactctgaaagcgagcaggaagcaaagccaaaaaaaaggaag
atctgcccaacagatgaaaatgacagtggaattgaggtatattaccgggaggaggaggat
gatgaccaggaggaagaggcagctgaaaggaaacctaagataaagaaacctggtgaagct
cccaggctgcgggtttccatgagcttcacctgggatgaggacatgaatgcaatggacaca
gctgtgctgaatcagaaggaagagagctcagagagtgaggaggaggaggatccgcagtcg
aagatgaagaaacaaacaaagaaggagaaggagctagagaagcagaagaaggagaaggag
ctctgcaaattagaggcagctctgatggaccccagtcgacagccgcagtcagcagatgat
tttgaccgtctagtgctgagcagtcccaacagctccattctctggctacagtacatggct
ttccacctccaggctactgagattgagaaggccagagctgtggcagagagagcccttaaa
acaatctgcttcagggaagaacaggagaagctgaacgtctgggtagctctgctgaacttg
gagaacatgtatggttctgaggagacattgatgaaggtgttcgagagagctgttcagtac
aatgaacctctgaaagtattccagcatctgtgtgatatctatgccaattctgagaagtac
aagcaagcagaagaactgtaccacacaatgctgaagcgtttccgtcaggagaaatctgtg
tggctgaaatatgcgtctttcctcctgaagcaaggccagactgaggctacacacaggctt
ttggagcgtgctctcaaggctttggccaccaaagaacatgtggatgtcatctcaaggttt
gcacagctcgagttccgttttggggactcagaacacgctaaggccctctttgagagcacc
ctcagcagctatcccaagaggacagacatctggtccatctacatggacatcatgatcaaa
catggcagccagaaggaagtacgggacatctttgagagggtcatacacctgagcttggca
ccaaagaagatgaaattcttctttaaacgctacctggattatgagaagaagtttggtaca
acagaaagtgtcctggctgttaaaagagcagcacttgagtacgtggagaccaagagctcc
cttgctgttgcctaa
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