Apaloderma vittatum (bar-tailed trogon): 104271973
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Entry
104271973 CDS
T08559
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03008
Ribosome biogenesis in eukaryotes
avit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104271973 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
104271973 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avit03021
]
104271973 (XRN2)
03019 Messenger RNA biogenesis [BR:
avit03019
]
104271973 (XRN2)
03009 Ribosome biogenesis [BR:
avit03009
]
104271973 (XRN2)
03016 Transfer RNA biogenesis [BR:
avit03016
]
104271973 (XRN2)
Transcription machinery [BR:
avit03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104271973 (XRN2)
Messenger RNA biogenesis [BR:
avit03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
104271973 (XRN2)
Ribosome biogenesis [BR:
avit03009
]
Eukaryotic type
Pre-60S particles
RNases
104271973 (XRN2)
Transfer RNA biogenesis [BR:
avit03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
104271973 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
104271973
NCBI-ProteinID:
XP_009865126
LinkDB
All DBs
Position
Unknown
AA seq
938 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKAKECNGVKAPIDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAEEKQKIRQEILAKGGILPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFTPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADSLPMAEQE
FIFIRLSVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKE
KRKRMKRDQPSFIPGGQFSPQALGNRSSPQAISNLRQAAFEMRMHDRQNSTTSSSPNTSL
TSDGSPSLAGGIKRKAEDSDSEPEPEDNIRLWETGWKQRYYKNKFDVDASDEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWNWYYPFHYAPFASDFEGIADLPSDFEKGSKPFKPLEQLMG
VFPAASGNFLPPTWRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEESRRNSLGGDVLFVGKHHPLCDFIVEQYKTKNTEPVDIPPELCHGIQG
KLTLNENAILPDQTVESPVPVLRDLTQNSAVSISFKDPQFDEDFVFKATVLPGAKKPAPV
LKPGDWEKNNNDGRPWRPQLGFNRDRKPVHLDQSAFRTLGYSNAVPLGTCGSPYARPLLS
GQQQIPRLLSNLRPQDSWRGPTPLFQQTPQRTAGASSLHAWNRMLQSQNQYPPGQFQGLG
GPMSYPQRPEDRMDRGRQAYGPGRPYPLPPPSGRYSWN
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggccttcttccgctggctcagccgcaagtatccctccatcatcgtcaac
tgcgtggaggagaaggctaaagagtgcaatggagtcaaggctccgattgatacgagcaag
ccgaaccctaacgaggtggagtttgacaacctgtatttggatatgaatggtataattcac
ccttgtacgcatccggaagacaagccagcacccaaaaatgaagatgaaatgatggttgcg
atctttgagtacatcgacagaatcttcaacattgtgagaccaaggcggcttctttacatg
gctatagatggagtggctccgcgtgcgaaaatgaatcaacagcggtcaagaagattcaga
gcatcaaaggagggcatggaagctgctgaagagaagcaaaaaataagacaagaaattctg
gcaaaaggtggcattcttcctccagaagaagtgaaagagagatttgacagcaactgcatt
accccaggaactgagtttatggacaatcttgctaaatgtctccgctattacatcgctgac
cgtctgaacagtgacccggggtggaaaaatttgacggttattttgtctgatgccagtgct
cctggtgaaggtgaacataaaatcatggattacatcagaaggcaaagagctcagccaaac
catgacccaaacactcatcactgtctgtgtggggctgatgctgatctgattatgcttggg
ttagctacacatgaaccaaacttcactataattagagaagagtttacaccaaataaaccc
aagccatgtgctctctgtaaccagatgggtcatgaagttaaggattgccaaggtttgccc
agagaaaaacaaggcaagcacgatcaatttgcagacagccttcctatggcagaacaagaa
tttatcttcatccgattaagtgttttgcgagagtatttggaaagagagctcactatggcc
agcttgcctttcacttttgattttgaaagaagtgttgatgactgggtcttcatgtgcttc
tttgtgggaaatgactttcttcctcacctgccctctttggagatcagggagggagcaatt
gatcgcttggttaacatatataaaaatgtggtgcacaagactgggggctacctcacagaa
agtggtttcgtcaacctacaacgtgtccagatgatcatgttagctgttggagaagttgaa
gatagtattttcaaaaagagaaaagatgatgatgataacttcaaaagacgacaaaaagaa
aaaaggaaaagaatgaagagggatcagccttcctttattcctggtggacagttttcccct
caagctctgggaaatcgatctagtcctcaggcaatcagtaaccttagacaagccgccttt
gagatgagaatgcatgacagacagaactctacaacttcatcgtctccaaataccagcctc
acttctgacggcagcccgtccttggcaggaggaattaagcgaaaagctgaagacagtgac
agtgaacctgagccagaggataatatcaggttatgggaaactggttggaaacagcgctac
tataaaaacaaatttgatgtcgatgcatccgatgagaaattccgtcgtaaagttgtgcag
tcctacgtagaagggctttgctgggttctcagatattattatcagggctgtgcatcctgg
aactggtattacccttttcactacgctccgtttgcgtccgactttgagggtattgcagac
ctgccctctgattttgagaagggctcaaaaccgtttaaacctcttgaacaacttatggga
gtatttccagctgcaagtggaaattttctaccaccgacgtggaggaagctcatgacagac
ccggaatcaagcataattgacttctaccctgaagattttgctattgatttaaacgggaag
aaatatgcttggcaaggtgttgcgttattgccatttgtggatgagcgacgccttagagct
gccctggaagaagtctaccctgacctcactcctgaagaaagcagaagaaacagccttggt
ggtgatgttctctttgttgggaaacaccatcccctttgtgactttattgtagaacagtac
aagaccaaaaatacagagccagtggacatacccccagagctgtgccatggaatccaagga
aagctgacactgaacgaaaacgccattcttccagatcagacagtggagtctcctgttcca
gtgctgcgtgaccttacacagaattctgcagtcagcatctctttcaaagacccgcaattt
gatgaagactttgttttcaaggctacggtattacctggtgcaaagaaacctgctccagtt
ctgaagccaggagactgggaaaaaaacaacaatgatggcaggccttggagaccacagctt
ggatttaaccgggacagaaaacctgtgcatttggatcagtcagcatttagaactttaggg
tattccaatgcggtgcctctcggaacatgcgggagcccctacgcccggccgcttctgagt
gggcagcagcagattcctaggttgttgtcaaatctcagaccccaggattcttggcgaggt
cctacgcccttgtttcaacagacaccacagaggactgccggggcctcttctctccacgcc
tggaaccgcatgctgcaatcccaaaaccagtatccacctggtcaattccaggggctgggc
gggcccatgagttaccctcagagaccggaagatcgcatggacaggggaagacaggcgtac
ggccctgggagaccctacccgctgccacctccctcaggaagatacagctggaattag
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