Apaloderma vittatum (bar-tailed trogon): 104273229
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Entry
104273229 CDS
T08559
Name
(RefSeq) LOW QUALITY PROTEIN: tenascin-R-like
KO
K06252
tenascin
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit04510
Focal adhesion
avit04512
ECM-receptor interaction
avit04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104273229
04518 Integrin signaling
104273229
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104273229
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
avit00536
]
104273229
Glycosaminoglycan binding proteins [BR:
avit00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104273229
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Fn3_Dep-1_3rd
Fn3_PBP1
Fn3_VIN3
Fn3_Dep-1_2nd
Interfer-bind
FN3_Tor_3rd
Fn3_ROS1
Fn3_R-PTP-O
Fn3_SaeA_2nd
Motif
Other DBs
NCBI-GeneID:
104273229
NCBI-ProteinID:
XP_009866789
LinkDB
All DBs
Position
Unknown
AA seq
900 aa
AA seq
DB search
NNEGGVIAQLPSTVTTFNQTGLKPGEEYTVTVVALKEQARSPPTSDSISTLIDGPTQILV
RDVSDTVAFVEWTPPRAKVDXXXXXXGEGGRTTFRLQPPLSQYSLQALRPGARYHLAVSA
LRGANESRPALAQFTTEIDAPKNLRVGSRTPASLELAWDNSEAEAQSYRVVYSTLAGEHY
HEVLVPRDTGPTTRATLADLVPGTEYGIGISAVMDSQQSVPATMNARTELDSPRDLLVTA
STETSISLAWTKAMGPIDHYRITFTPASGMASEVTVPRDESQLTLSELEPGTEYTISIIA
ERGRQQSLEATVDAFTGVRPITQLHFSQLTSSSVNVTWSDPSPPADRLILTYSPRDEEET
QQVTLDGTRRHASLTGLQPSTEYLVSLVAMHGAISSEPVVGSITTGIDAPKDLRVGNVTQ
ESMVVYWSPPIAAFDHYRISYRAAEGRTDSTAIASDATEHALRHLQPATKYEIEVKSVRG
RDESEVASITMYTAMEAPLGVTATNITPTEVLLQWNPPLSEVESYVLVLTRRSAEGETIL
VDGVNQEYQLTNLLPSTTYTVSMYATNGPLTSQTISTNFTTLLDPPTNLTASEVTRRSAL
LSWVPPVGEIENYIMTYRSTDGSRKELIVDADDTWIRLEGLSETTEYIVHLQAAQNAMRS
GFISTSFTTGGRVFANPQDCAQHLMNGDTLSGVYTISINGDLSQRVQVYCDMTTDGGGWI
VFQRRQNGLTDFFRKWADYRVGFGNLEDEFWLGLDNIHKITSQGRYELRIDMRDGQEAAY
AYYDKFSIGDSRSLYKLRIGDYNGTSGDSLTYHQGRPFSTKDRDNDVAVTNCAMSYKGAW
WYKNCHRTNLNGKYGESRHSQGINWYHWKGHEFSIPFVEMKMRPYNHRNISGRKRRSLQL
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
aataacgagggcggtgtgatcgcccagctccccagcaccgtcaccaccttcaaccagaca
gggctgaagccgggggaagagtacacagtcaccgtggtggccctgaaggaacaagccagg
agccccccaacatctgacagcatctcgaccctcattgatggcccaacgcagatcctggtg
cgagacgtctcagacacggtggccttcgtggagtggacgccgccacgcgccaaggtggac
nnnnnnnnnnnnnnnnagggggagggcgggaggacgaccttccgcctgcagccccccctc
agccagtactccctgcaggccctgcgccccggcgcccgctaccacctcgctgtcagtgcc
ctccggggtgccaacgagagccggccagccctcgcccagttcaccacagagatcgatgcc
cccaagaacctgcgggtgggctcgcggacacctgccagtcttgagcttgcctgggacaac
agtgaggctgaggcgcagagctacagggtggtctacagcaccctggctggggagcactac
catgaagtcctggtgccccgcgacaccggtcccaccacccgggccaccctggcagatcta
gtgcccggcacagagtatggcatcgggatttcggccgtgatggacagccagcagagtgtg
ccggccaccatgaacgccaggaccgagcttgacagcccccgggacctcctggtgacagcc
tccacagagacatctatctcactggcctggactaaagccatgggtcccatcgaccactac
cgcatcaccttcacccctgcctcagggatggcctccgaagtgacagtgccccgggacgag
tcacagctcaccctctcagagctggagcctgggacagagtacaccatctccatcatcgct
gagaggggacgccagcagagcctggaggccaccgtggatgccttcacaggggtgcggccc
attactcagctccacttctcccagctgacatcatccagtgtgaatgtcacatggagcgac
ccatcccctccagcagaccgcctcattctcacctacagcccccgggatgaggaggagaca
cagcaggtcacacttgacggcacccgcaggcacgccagcctgacgggcttgcagccatcc
accgagtacctggtgtcactggtggccatgcatggtgccatcagctctgagcctgttgtg
ggctccatcacgacagggatcgatgcaccaaaggacctcagggtgggcaacgtcacccag
gagtccatggtggtctactggagccctcccatagctgccttcgaccactatagaatatcc
taccgcgctgctgaagggagaacagacagcaccgccattgccagcgatgccaccgagcat
gccctgcgacacctccagcctgccaccaagtatgagatcgaggtgaagagcgtgcggggc
cgggatgagagcgaggtggcctccatcaccatgtacacagccatggaggcccccttaggg
gtcacagccaccaacattacccccaccgaggtgctgctgcagtggaacccaccgctgtcg
gaggtggagagctacgtccttgtcctcactcgccgttcagctgaaggagaaacaattctc
gtggacggagtcaaccaggagtaccagctaaccaacctcctgcccagcaccacctacaca
gtctctatgtacgccaccaatgggcctctcactagccagaccatcagcaccaacttcaca
actcttttggatcctccaacaaatctgaccgccagcgaagtcacgcgacggagtgccctg
ctctcctgggtgcctcctgtgggagagattgagaactacatcatgacctacagatccacc
gacggcagccggaaggagctgattgtggatgctgacgacacatggattcgcctggagggg
ctttctgagaccacggagtacattgtgcacctccaagctgcccagaacgccatgcggagc
ggcttcatctccactagcttcaccacaggtggacgtgtctttgctaaccctcaggactgc
gcccagcacctcatgaacggagacacactgagcggtgtctacaccatctccattaacggg
gacctcagccagcgggtgcaggtctactgcgacatgaccacagatggaggcggctggatt
gtcttccagaggcggcagaacgggctgaccgatttcttccggaaatgggcagattatcgg
gttggcttcggaaacttggaggatgagttttggctaggcttggacaacatccacaagatc
acgtcccaagggcgctacgagttgcgaatagacatgagggatggccaagaagcggcatac
gcctactacgacaaattctccatcggtgactcccggagcctgtacaagctgcgaatcggg
gactacaacggcacttcaggagactctctcacctatcaccagggccgccccttttccacc
aaggatagggacaacgatgttgctgtgaccaactgcgccatgtcctacaaaggggcctgg
tggtataagaactgccaccgcaccaacctcaacggcaagtacggagagtcccggcacagt
caggggattaactggtaccattggaaaggccatgagttctccatcccttttgtggaaatg
aagatgcgaccttacaaccaccgtaacatctctgggagaaagcgacggtccctacagctc
tga
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