Apaloderma vittatum (bar-tailed trogon): 104273262
Help
Entry
104273262 CDS
T08559
Symbol
CIITA
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
104273262 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
avit01001
]
104273262 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
avit04054
]
104273262 (CIITA)
Enzymes [BR:
avit01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
104273262 (CIITA)
Protein kinases [BR:
avit01001
]
Serine/threonine kinases: Other
TAF1 family
104273262 (CIITA)
Pattern recognition receptors [BR:
avit04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
104273262 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
Motif
Other DBs
NCBI-GeneID:
104273262
NCBI-ProteinID:
XP_009866829
LinkDB
All DBs
Position
Unknown
AA seq
875 aa
AA seq
DB search
RTKVDIWQYFMFLAGNLNLDETSAENTEKFADMKAQKCHKRSFLGSAESCSGASEPKYKK
IVEVPALSTGNGSFLAMPLSSHPVTSTSLTNQHVSLSVPATGVLERSFLIPGFSAPLIPE
CLPVSVKGSQESGGFADPPQQIINFVLENGTPDVIIYPVLSSSMETLISPSFAVSLCGLE
MFKEAQVPIVPSEEPFKRPKPVEAFRTSLMDYFRDMCKSVATEREVTLDHLFVDGTLVQS
QTETKNGKNSGKTVEKELVTCNLQGKEKTALQTSQIFQNLGGKDLETKVVVVLXMGKSIL
VQKICQDWSNGEFPQFEFVFWFDCKQISLPEKRYSLKDLLLEFFVKPQEGSKEIFEYILQ
NPAKVLLAFDGFEGLHDHENFPRCSTGQPEQDLCRVKELLSGLIQKKLLNGCTLLLTARP
KDKVFQCVSKVDKTVEIVGFSPQQRELYITKYFEGLPCCGSALKLIKESEYLFSHCYSPV
MCRFVCFLCEAVLGTGDRSLPSTLTAVFLKFVQQKVIPVQTDVTAVQSQESLATLAHVAW
YLGEKHQNAMKSDLLPSKKVKEFALKCGFFLPCAFLMHSDSGEEEFGSTFSDFVIQNFLG
ALHLMLAEDIKDKSITKYLPFSSKKKKPYNWLELVPRFLAGLLFLQDDPYFCSLSNKDAN
QTTKKQKTFLKYVRRLQINELWPERLLELLHCIYETQSNYLLQHVSLRLKPHLSFLDVVL
TPPDVHVLHSVLKRSKKEFSLDLRNSSIDVRGLKHLVALKNVASFRASLSDTVRLWKALE
QAKDYELLRVSTEKFVLDPFKAKTMKDVSDLSDLVELQEKMSSCVEDASGCSSYEIPALR
NLRKLEFALGPVCGLQGFLKLVEILAAFPSLQHLE
NT seq
2629 nt
NT seq
+upstream
nt +downstream
nt
gagaacaaaagttgacatttggcaatatttcatgtttttagcagggaacctcaatttgga
tgaaacatctgctgaaaacaccgagaaatttgctgacatgaaggcgcagaaatgtcacaa
acgaagcttcttgggctccgcagagagttgctctggtgcttcagagcctaaatacaagaa
aattgtggaagtccctgcactgtctacagggaatggcagtttcttagctatgcccctcag
cagccacccagtgacctccacctcgctgactaaccagcacgtgtccctttctgttcctgc
tactggtgtgttggaaagaagcttcctcattcctggattttcagcacctttgattccaga
gtgtctacctgtcagtgtgaaagggagccaagagagcggaggcttcgcagatcctcctca
gcagataattaactttgttcttgaaaacggcacacctgatgttataatatatccagtgct
gtcatcttccatggaaacattgatatccccaagttttgcagttagtttatgtggtttaga
aatgttcaaagaagcccaagttcccatagttccttctgaagaacctttcaaaagaccaaa
gccagtcgaagctttccgtacgtcacttatggattatttccgagacatgtgcaaatctgt
ggccacggagcgtgaagtaactcttgatcacctgtttgttgatgggacgcttgttcaatc
ccaaactgaaaccaagaatgggaagaatagtggaaaaacagtggaaaaggagctggtcac
ttgcaatctgcaagggaaggaaaagacagcccttcaaacaagccaaatatttcaaaactt
gggaggtaaagaccttgagactaaagtggttgtggtgcttnnaatgggcaaaagcattct
tgttcagaagatctgccaggactggtccaacggcgagtttcctcagtttgaatttgtatt
ttggttcgactgcaaacaaattagcttgcctgagaagcgatacagcctgaaggatctgct
gcttgaattttttgtaaagcctcaagagggaagcaaagagatctttgagtacatattgca
aaatcctgctaaagtccttctggcttttgatggttttgaaggattgcacgatcatgagaa
ttttcctcgttgctcaactggccagcctgaacaagacttgtgccgtgtaaaggagctgct
ttccgggctcatccaaaaaaagctactcaatggttgtacattattacttacagcaagacc
gaaagacaaggtgttccagtgtgtgtccaaagtggacaagactgttgaaatagtggggtt
ttcccctcagcagagagaactgtacataaccaaatactttgaaggattaccctgttgtgg
gagtgcactgaaattaatcaaagagagtgagtacttgttcagtcattgttacagccctgt
tatgtgtcgatttgtttgttttctctgtgaggccgtacttggaacgggagaccgaagcct
tccttccactcttactgcagtcttcctgaaatttgttcagcagaaggtaatacctgtgca
aacagatgttacagccgtgcaaagtcaagagagtcttgctacactagcccacgtagcctg
gtatcttggggaaaagcaccaaaacgccatgaaaagcgatcttcttccttcaaagaaagt
taaagagtttgctctgaaatgtggatttttcctgccatgtgcattcctcatgcattcaga
tagtggagaagaagagtttgggagcacattttctgattttgtcattcagaatttcttggg
tgctcttcaccttatgttagcagaagacatcaaggataaaagtataacaaagtacctgcc
tttttcatccaagaagaaaaaaccttataactggttagaattagtgcctcgatttttggc
tggattgttgttcctccaggatgacccctacttctgctctctctcaaataaggatgcaaa
ccaaacaaccaagaagcagaaaacattcttgaaatatgttagaaggctgcaaatcaatga
gctctggccggagaggttactcgagcttttgcattgcatttatgaaacacaaagcaatta
tcttttgcagcatgtgtccttaaggctgaagccacacctgtcttttctggatgtagttct
tacaccacctgatgtccatgtactgcattctgttttaaaaaggtcaaaaaaagagttttc
cttggatttacggaacagcagcattgacgtgcgagggctaaaacacctggttgccctaaa
gaatgtggcatcgttcagggcctccctcagtgatacagtcaggctctggaaagctttaga
acaagcaaaagactacgaactcctgagagtatcaacagagaagtttgttcttgatccctt
taaggcaaagacaatgaaggacgtcagtgacctttcagaccttgtagagctgcaggagaa
gatgagcagctgtgtggaagatgcatctggttgcagcagctatgaaatccctgccctcag
aaacctcagaaaactagaatttgcgctgggtccagtatgtggcctgcagggattcttaaa
actcgtggaaattcttgcagcatttccatcacttcagcatttagagtga
DBGET
integrated database retrieval system