Apaloderma vittatum (bar-tailed trogon): 104273343
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Entry
104273343 CDS
T08559
Symbol
DROSHA
Name
(RefSeq) ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104273343 (DROSHA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avit03019
]
104273343 (DROSHA)
03009 Ribosome biogenesis [BR:
avit03009
]
104273343 (DROSHA)
03036 Chromosome and associated proteins [BR:
avit03036
]
104273343 (DROSHA)
Enzymes [BR:
avit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
104273343 (DROSHA)
Messenger RNA biogenesis [BR:
avit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
104273343 (DROSHA)
Ribosome biogenesis [BR:
avit03009
]
Eukaryotic type
90S particles
RNase
104273343 (DROSHA)
Prokaryotic type
rRNA processing factors
104273343 (DROSHA)
Chromosome and associated proteins [BR:
avit03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
104273343 (DROSHA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helical_CED_Drosha
Ribonuclease_3
Ribonucleas_3_3
dsrm
RM44_endonuclase
DSRM_MRPL44
Cro
YcaO
5_3_exonuc
Motif
Other DBs
NCBI-GeneID:
104273343
NCBI-ProteinID:
XP_009866958
LinkDB
All DBs
Position
Unknown
AA seq
1335 aa
AA seq
DB search
MSFHSGRGCPRGQGGPGARTSTQTYRPQNLRQLHPQQPSVQYQYDQQTAPPTTYSNPPTT
GYMPPRPDFVPYPPPVPPSTQNPISQCPMRPPFPNHQMRQSFPVPPCFPPAPPPVPSPSN
APVPGTPAGQSTFPYMMPPPAVPHPPPPPVIPQQVNYQPVYSTGYSQQSFPPPNFSSYQH
SSGSFQSSVTNSGGSSHFRHTGQYQGEKSQSDRRSPDRSKHYDEHRHREHGHIHGDRHRS
ANHGDRRDRGRSPDRRRQECSRHRTDYDRGRISPHHRSYERNRERERERHRHRDSRRSPS
PDRSYKKDYKRAGSRSPSRERKRPRWEEDRERWSENQSSSKEKNYTAIKDKESEENASEK
NEEEDEELLKPVWVRCTHSESYYSNDPMDQVGDSTVVGTSKLRDLYEKFDDELGKRQAKA
KAARPPWEPPKTKLDEDLESSTDSDCDSEDDSSCSSSSDSDVFDVIAEIKRKKAHPDRLH
EELWYNDPGQMNDGPLCKCSAKARRTGIRHGIYPGEEPIKPCRPMTNNAGRLYHYRITVS
PPTNFLTDRPTVIEYDDHEYIFEGFSMFAHAPLTNIPLCKVIRFNIDYTIHFIEEMMPEN
FCVRGLELFSSYLFKDILELYDWNLKGPSLEDDSISCPRFHFMPRFVRFLPDGGKEVLSM
HQILLYLLRCNKALVPEEEIANMLQWEELEWQKYAEECKGMIVTSPGMKPSSVRIDQLDR
EQFNPDVITFPIIVHFGIRPAQLSYAGDPQYQKLWKSYVKLRHLLANSPKVKQADKQKLS
QREEALQKIRQKNTMRREVTVELSSQGFWKTGIRSDVCQHAMMLPVLTHHVRYHQCLMHL
DKLIGYTFRDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRK
KGINTLINIMSRLGQDDPAPSRINHNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATY
RTAIVQNQHLAMLAKKLELDRFMLYAHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEE
AKQLFGRLLFNDKDLRDVWLNYPLHPLQLQESNTDRQLIETSPVLQKLTEFEEAIGVIFT
HVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRS
SLVNNRTQAKVAEELGMQEFAITNDKTKRPVALRTKTLADLLESFIAALYIDKDLEYVHT
FMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYT
VAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQMAHQKRFIERKYRQELKEMRWER
EHQEREPDETEEAKK
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atgtctttccattctgggcgaggatgtccccgcggtcaggggggaccaggagcaagaacc
tcaacacagacctaccgccctcagaacctacggcagcttcacccacagcagccctctgta
caataccagtatgaccagcaaactgctcctccaacaacctactcaaaccctccaactacc
ggttacatgcctcccaggccagactttgtgccctatcctcctcctgtacccccttccaca
caaaaccccatcagccagtgtcctatgaggccaccgtttccaaaccaccagatgaggcag
agcttcccggtgcctccctgcttccctcccgctcctccgccggtgccaagtccgagcaac
gctcctgtgccaggaactcctgccgggcaaagcacctttccttacatgatgcctcctcct
gcggtgccacatcctcctcccccaccagtcataccgcagcaagtcaactatcagcccgta
tattccacggggtattcgcagcagtccttcccaccgccaaacttcagtagctaccagcac
agctccggctcctttcagagcagcgttaccaacagcggcggcagcagtcattttcggcac
acgggccagtaccagggagagaagtcacaaagcgatcggaggtctccagacaggagcaag
cactatgatgagcaccgacatcgtgaacacggtcacatccacggtgacaggcatcggtcc
gctaaccatggggatcgtcgggatcgaggccggagtcctgataggaggagacaggaatgc
agtcggcaccggacggattatgacagaggaaggatatcgcctcatcacaggagttatgag
cgtaacagggagcgggagagggagaggcataggcaccgggacagcagaagatcgccatca
ccagacagatcatacaaaaaagattacaagagagcaggaagccggtcaccaagcagagag
agaaagagaccccgatgggaggaggacagagaaaggtggtctgagaaccagagctccagc
aaagagaaaaattataccgctatcaaagacaaagaatcagaggagaatgcatctgaaaaa
aatgaagaggaagatgaggaattacttaaaccggtttgggttcgctgtacccattctgaa
agctattattccaatgatcctatggatcaagtgggtgactctactgtggtaggaacaagc
aaactccgggatctgtatgaaaaatttgacgacgagttgggaaagcgacaggcgaaggcc
aaagcagccaggcccccctgggagccaccaaagaccaagctggatgaagacttagagagc
tccactgactcagactgcgactctgaagatgacagcagctgctccagcagttcagattca
gatgtttttgacgtcattgcagaaattaagcgtaaaaaagcgcaccctgatcgtctccat
gaagaactgtggtacaatgatccaggacagatgaatgatggacctttgtgcaagtgcagt
gctaaagcccgacgaacaggaatcagacatggcatttatcctggcgaagagcccattaaa
ccatgtcgccccatgaccaacaacgctggaagactgtaccactaccgaattactgtgtct
cctcccacaaacttcttaacagacagacccaccgttattgagtatgatgaccatgaatat
atctttgaagggttctccatgtttgcccatgccccgctaacgaacattcctctatgtaaa
gtaatcagatttaacattgactatacaattcatttcattgaagagatgatgcctgagaat
ttttgtgtgagaggtcttgagctgttctcttcatatctattcaaagatattttggagctc
tatgactggaatcttaaaggtccgtcacttgaagatgattctatttcttgccccagattt
cacttcatgccacgctttgtgagatttcttccagacggaggaaaagaagtactctcgatg
catcagattcttctctacttgttgcgatgcaataaagctctggtgcctgaagaggagatc
gccaacatgcttcagtgggaagaactggaatggcagaaatatgcagaagaatgcaaagga
atgatcgttaccagccctggcatgaaacccagctcagttcgtattgatcaactggaccgc
gaacagttcaatcctgatgtaattactttccccattattgtccactttgggatacgacct
gctcaactcagttatgctggagatcctcaataccaaaagctgtggaagagttatgtgaag
ttgcgtcacctactggctaatagtcccaaagttaaacaggctgataaacagaaattatca
caaagagaggaagctctgcagaaaattcgtcagaagaacacaatgaggcgtgaagtgacc
gtcgagttgagtagccagggattctggaaaacggggatacgctccgatgtctgccagcat
gcaatgatgctccctgtcctcactcaccatgtccgctaccatcagtgtctgatgcatttg
gacaaactgataggctacacgtttcgagataggtgcttgctgcagcttgccatgactcat
ccaagccatcacttaaattttggaatgaatccagatcatgccagaaattccttatccaac
tgtgggattcgacagccgaagtatggagacaggaaagttcaccatatgcacatgagaaaa
aaggggataaacaccctcataaatatcatgtcccgtttgggacaggatgatccagctcct
tccaggattaaccacaacgaacgtttagaatttctgggagatgctgtggtggagttctta
acaagtgtccacttgtactacctgtttcccacgctggaggagggaggcttagctacgtac
cgcactgccatcgtacagaaccagcacctggccatgctggctaagaagctggaactagat
cgatttatgctttatgctcatggcccagacctttgcagggaatcggatctgcgccacgcc
atggccaactgcttcgaagccctaataggagctgtttatctggaggggagcctggaagaa
gcaaaacaattatttggacgtttactcttcaatgacaaggacctgcgggatgtatggctt
aattatccactacacccactccaactgcaggagtccaatactgacaggcaactcatcgag
acttctccagttcttcaaaagctgacagagtttgaggaggcaattggagtcatctttact
catgttcgacttctagcacgtgcgttcactctgaggacagtaggctttaaccatctaact
ctaggccacaaccagaggatggaattcctgggtgactccataatgcagttggtagccaca
gagtatttattcatacatttccccgatcatcatgaagggcacttaacgctgttgagaagt
tctctggtgaacaacaggacacaggccaaggtggcagaagagttgggtatgcaagaattt
gccatcactaatgacaagacaaaacgacctgtagctcttcgaactaagaccttggctgat
ctattggaatcctttatagctgccctatatattgataaagatttggaatacgttcacact
ttcatgaatgtatgcttttttccacggctaaaggaatttatcttgaatcaagattggaat
gatcctaaatctcagcttcagcaatgttgcttgactctcaggacagaaggaaaagagcca
gacattcctctttacaagacattgcagacagtgggaccgtcgcatgccaggacatacaca
gtagctgtttacttcaaaggagaaagaataggttgcggtaaaggcccaagtattcagcaa
gcagaaatgggagctgcaatggatgcacttgaaaaatataactttccccagatggcccat
cagaagcggttcattgaacggaaatacagacaagagttgaaagaaatgaggtgggaaaga
gagcatcaagagagagagccagatgagaccgaagaagcaaagaaataa
DBGET
integrated database retrieval system
