Apaloderma vittatum (bar-tailed trogon): 104273345
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Entry
104273345 CDS
T08559
Symbol
LSM6
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03018
RNA degradation
avit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104273345 (LSM6)
09123 Folding, sorting and degradation
03018 RNA degradation
104273345 (LSM6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avit03019
]
104273345 (LSM6)
03041 Spliceosome [BR:
avit03041
]
104273345 (LSM6)
Messenger RNA biogenesis [BR:
avit03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104273345 (LSM6)
mRNA degradation factors
5'-3' decay
Lsm complex
104273345 (LSM6)
Spliceosome [BR:
avit03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
104273345 (LSM6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
104273345
NCBI-ProteinID:
XP_009866961
LinkDB
All DBs
Position
Unknown
AA seq
94 aa
AA seq
DB search
MFSLACFPSLPEIKMSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALE
QTEEYVNGQLKNKYGDAFIRGNNVLYISTQKRRM
NT seq
285 nt
NT seq
+upstream
nt +downstream
nt
atgttttctcttgcttgttttcccagcttaccagagatcaagatgagtctacggaagcaa
acccctagcgactttctaaaacaaatcattggaaggccagttgttgtaaaattaaattct
ggagtcgattaccgaggtgtcctggcttgcctggatggctatatgaatatagctctggaa
cagaccgaagaatatgtaaacggacaattaaagaacaaatacggggatgcatttatccga
ggaaataatgtattgtacataagtacgcagaagaggaggatgtga
DBGET
integrated database retrieval system
