Apaloderma vittatum (bar-tailed trogon): 104273978
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Entry
104273978 CDS
T08559
Symbol
COL15A1
Name
(RefSeq) collagen alpha-1(XV) chain
KO
K08135
collagen type XV alpha
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
avit00535
]
104273978 (COL15A1)
Proteoglycans [BR:
avit00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
104273978 (COL15A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
NigD_N
3keto-disac_hyd
Motif
Other DBs
NCBI-GeneID:
104273978
NCBI-ProteinID:
XP_009867785
LinkDB
All DBs
Position
Unknown
AA seq
1280 aa
AA seq
DB search
MTKARDWVTTFSKSVYEERGSKGHLDLTELIGVPLPPSVYFVTGYGGFPAYSFGPDANIG
RLTSAVIPSPFYRDFAIVVTVKPNSDHGGVLFAITDAFQKTMYLGMRLSPVDDSTQRIIV
YYTEPGSHISREAAAFKVPVMTNKWTRFTVTVQGNDVALFMDCEEYQRVQFQRSARALMF
EPGSGIFVGNAGATGLEKFTGSIQHLTIKSDPSGAEDHCEDDDPEASGDISGNDSIPEHE
GIPEAQEVLAPPHLPIRPAQLPLDGLTKFVQHLLISRNEICSAVTETGQGNNDSTTVTQK
ILREEGGSGAGVLPGVSREEGQDSEEEEDGPTRSPGSSGAEDMEKKDQGPAGRPGKLGQR
SQAGKNGLQSLPGLKGKAGLKGEKPVDTCALLGKSSTTQENEKRKISSKGRCKAELFISS
RYRAQQGFDSPRRFAVIEYSSTYRRGGNAHILNAQYSGNFKERVLMLAGVFPELKFDEIS
LQNSPIARVPCRTVITVLLEHLRNRLEPEESGSGDIDGETEILRGLPGPPGPPGLPGLPG
KPAPNSGVGPPGSPGEDGASGEPGPEGPQGPPGLDGVVGPPGQKGEKGDRGLPGSVGPKG
DTGVAGSTGPKGQAGAVGSPGQPGPPGPPGPPGPPGPVARSYSLGFEDMEGSGSIGLLSE
SGITGSRGPEGERGNIGPPSSKGPKGEKGDPGPQGEPGQNGNSVIGPPGPPGPPGPIIAI
PEGPRGPKGDIGVPGLQGPKGQQGEKGEPGAIVAADGALAELLGRKGEKGEAGVVGPAGP
MGPIGPTGPKGELGFPGRPGRPGLNGLRGAKGDRGEAFSGPPGLPGPPGPPGPPGRIVHI
KGTVFPISPRPHCKMPVSTPYPGNQEALNVHGAKANGGSWGLPSSVDFKGEKGDRGAPGP
PGPPLPPSYFSHFINSIKGEKGDNGVTGVKGEKGEPNGGFFLTGPPGPPGKPGLIGPKGD
SVIGPRGPPGLPGLPGLPGYGKIGPPGPPGPPGPPGPPAIYGSAAAMPGPPGPPGEPGPP
ATRNLVTTFRNIEGMLEKVHLVAEGTLIYLSEMSEVFIRVRNGWRKLQLGELIPIPADSL
PPPAISSHGFQSLPALSPVSNTNHRKPALHLVALNLPFSGDVRADFQCFQQAQRAGLTST
YRAFLSSHLQDLATVVRKTDRYHLPIVNLKGEMLFNNWDSIFNGDGGQFNAHVPIYSFDG
RNVMTDPSWPQKVIWHGSTANGIRLVSSYCEAWRTANTGATGQASPLKTGKLLDQKFYSC
SNQFIVLCIENSFVPDAQGN
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaagcaagggactgggtgacgactttctcaaaaagtgtttatgaagaacgaggc
tcaaaaggacatctcgacctcacggagttaataggagttcctcttcctccttccgtctac
ttcgtcaccggctacggagggtttccagcttacagctttggtccagatgccaacatcggg
cgactgacaagcgccgtcatcccgtcgcctttctacagagacttcgctatcgtagtcacc
gtgaaaccaaacagcgatcacggaggagtgctctttgcaatcacggatgccttccagaaa
actatgtacctgggaatgagactttcaccggttgacgacagcacccaaagaataattgtg
tactacacggagcccggctcccacatctcccgagaggctgccgcgtttaaagtgcccgtg
atgactaacaagtggacaaggtttacagtgactgtgcaggggaacgatgtcgctttgttc
atggactgtgaagaatatcaaagagttcagtttcaaaggtcagctcgagccttgatgttt
gagcctggctctgggatatttgtcggtaatgcgggagccacgggattggaaaagttcaca
ggctcgattcaacatctgaccatcaaatctgacccgagcggtgctgaagaccattgtgag
gatgatgatccagaagcttcaggggacatcagtggcaatgacagcattccagaacatgaa
ggtattcctgaagcccaagaagtccttgcacctcctcatcttcccataaggcccgcccag
ctccctctggacggcttgaccaaatttgtgcaacatctgctgataagcagaaacgagata
tgttcagctgtcacagaaactggacaaggcaacaatgattctaccactgtcacacagaaa
atcttaagggaagagggcggctctggagctggtgttttgccaggagtaagccgagaggag
ggccaggatagcgaggaagaagaggatgggcccacaagatctccgggaagttcaggggca
gaagacatggagaaaaaggatcaaggacctgctggacgtccagggaaacttggccaacgt
agtcaggctggtaaaaatggacttcagagcttgccagggctgaaaggaaaagcaggcttg
aaaggtgaaaagccagtcgacacatgtgctctcctgggcaaaagcagcactacacaagag
aacgagaagagaaaaatttcctcaaaagggcgttgcaaagctgaattattcatttcctcc
cgctaccgagcacagcaagggtttgacagtccacgtaggttcgctgtcatcgaatacagc
agcacataccggcgcggtggcaatgctcatattttgaatgctcagtactcgggcaacttt
aaagagagagtcttaatgttggcaggtgtctttccagagttaaaatttgatgagatatcg
cttcagaacagtcccatcgcacgtgtgccctgcaggactgttatcactgtgctcctagag
catctacggaacagattggaacctgaagagtcaggctccggagacattgatggagagact
gagattttaagaggtcttcctgggccgccaggccctccaggactacctggtcttccagga
aaaccagcacccaattccggagtaggacctcctgggtcaccaggggaagatggagcttct
ggtgaaccaggccctgaaggtcctcagggtcctcctggtcttgatggagtagttgggcca
ccaggacagaaaggagaaaagggtgatcgaggccttcctggttctgttggtccaaagggt
gatactggagtcgctggatcaacaggccccaaaggacaagctggtgctgttgggtctcct
gggcaacctggaccaccaggacctcctggacctcctggacctcctgggcctgtggcacgg
agctacagtttgggatttgaggacatggaaggatcaggtagcattggcctgttaagtgaa
tctggaattacaggatcaagagggccagagggagaaaggggcaacattggtcctccaagt
tcaaagggtcccaaaggggagaagggtgacccaggacctcagggggaaccaggacagaat
gggaacagtgttataggaccaccgggaccaccaggccctccaggaccaatcatagcgata
cctgagggccctcggggaccaaagggtgacatcggtgtgcctggattgcaaggacccaaa
ggacaacagggtgaaaagggagaaccaggagctattgttgctgctgatggagctttagct
gaattgctaggaagaaaaggggagaagggtgaagctggagtggtgggaccggcgggacca
atgggaccaataggacctactggacctaaaggagaactcggtttccctggacgtccaggc
cgcccaggactgaacggactgagaggggcgaaaggggatcgaggcgaagcgttcagtggc
cctcctggcttgcctggacccccaggcccccccggacctcccggacggatagttcatatc
aaaggaacagtcttcccaatctctcccagacctcactgcaaaatgccggtgagcactcct
taccctggaaatcaagaagctcttaatgtccatggtgctaaagcaaacggaggttcctgg
gggctgcccagctcagtggacttcaaaggagaaaaaggagacagaggtgctccaggacca
ccaggtccacctctgcctccatcatatttcagccacttcattaacagcataaagggtgaa
aaaggagacaatggagtcactggtgtaaaaggagaaaaaggagaaccgaacggagggttc
tttctgacaggacctcctggaccacctggaaaaccaggactaattggaccaaaaggggat
tcagtgatcggacccagaggacctccaggcttacccggccttcctggcttaccaggctat
ggaaaaattggacctcctggtccacctggaccgccaggaccgcctggaccacctgcaata
tatggctcagcagctgcaatgcctgggccaccaggtcctcctggagaaccagggccacct
gcaaccaggaatctggttacgacattccgaaacattgagggtatgttggaaaaagttcat
ttggtagcagaaggtacgctcatctatctgagtgaaatgagtgaggtttttatccgcgtt
cgaaacggatggagaaaattgcagcttggcgagctgattcctatccctgctgacagcctt
cctcctccagccatatcgagccatgggtttcagtctctcccagcactgagtccggtatca
aatacgaaccacagaaaaccagcgctgcatctggtggctttaaacttgccattctctggg
gacgtgcgagcagattttcagtgttttcaacaggcccaacgagcaggtttgacatctacc
tacagagccttcctctcctcccatttgcaagatttggccacagttgtcagaaaaacagac
cggtaccacttacccatcgtcaatcttaagggagaaatgcttttcaataactgggactct
atatttaatggcgacggtggacaattcaacgctcatgttccaatatactcctttgatggg
aggaacgtcatgacggatccatcctggcctcagaaagtaatatggcacggttcaaccgca
aatgggatccgactggtgagcagctactgtgaagcctggcgcacggccaacaccggtgcg
acgggacaagcatcaccgctgaagacggggaaacttctcgatcagaagttctatagctgt
agtaatcagtttattgttctctgtatcgaaaacagtttcgtacccgatgcccaaggaaac
taa
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