Apaloderma vittatum (bar-tailed trogon): 104274371
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Entry
104274371 CDS
T08559
Symbol
ZC3H12B
Name
(RefSeq) probable ribonuclease ZC3H12B
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avit03019
]
104274371 (ZC3H12B)
Messenger RNA biogenesis [BR:
avit03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
104274371 (ZC3H12B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
UBA_N4BP1_C
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
104274371
NCBI-ProteinID:
XP_009868285
LinkDB
All DBs
Position
Unknown
AA seq
837 aa
AA seq
DB search
MTAWSLVRKLKMEKRHSREDRNVEQDAGECSAESEEWTSSESEPEQPYFRSSCSNTQWRE
KEVSTKPHRPLCRSPCLDRPSFSQSSITQDLKLDECKPNLDKEYQAKMDFALKLGYAGDQ
IQAVLNKLGADALINDVLAELVRLGNKSESEGQSSASSTTSTLVPRGTCPKEIASPELSL
EDEVVDNSDNLRPIVIDGSNVAMSHGNKEGFSCRGIQLAVDWFLEKGHKDITVFVPAWRK
EQSRPDAPITDQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAFDSDGIIVSND
NYRDLQNEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRPVIPEHKKQ
PCPYGKKCTYGHKCKYYHPERANQPQRSVADELRISAKLSAVKTMSEGALAKCGTGPSSS
KGEIGSEVKRIAPKRQSDPSIRSVAVEPEEKLSVARKSEASSVPSLVSALSVPTLPPPKS
HAAGALNTRSASSPVPGSSQFMHQKSSLEHMSSVQYPPILVTNSHGTSVSYTDQYPKYES
LGDHGYYSLLSDFSNLSISSIRNTDYYGADTDQGMYSRNSSPCPDNCLSHTSNDSYSSYN
DLYLGVADASPEDNVKIHRLPSQNRLQPFAHGYHEALNRVQSYGTEEPKQALRKQSVSHL
GLHAQHPVAGARSSCPGEYPVPQNVHPSTAQPSRALVMTRMDSISDSRLYESNPARQRRP
PLCREQHASWDPLPCASDSYTYHSYPLSNNLMQPCYEPVMVRSMPEKMEQLWRNPWIGIC
GEPREPHIIPEHQYQTYKNLCNIFPPSIVLSVMEKNPHMTDAQQLAAVIVAKLRTGR
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atgacggcctggtctttggtaaggaagctgaaaatggagaagaggcactccagagaagat
agaaacgtggaacaagatgctggagaatgcagtgctgaatctgaggaatggacgagctcg
gaaagtgaacctgagcaaccatacttcagaagcagctgtagcaatactcagtggagagaa
aaggaggtttccactaaaccacaccggccgctctgtcgatccccgtgtttggatcgtcca
agtttttcacagagcagtatcacacaagatttaaagctagacgaatgcaaaccaaatttg
gacaaggaataccaagctaaaatggattttgctttaaagcttgggtatgcaggagatcag
atccaggctgtactgaataaattgggagcagatgcactcatcaatgatgttctggcggag
cttgtgagacttggcaacaaaagtgaatcagaaggacaaagcagtgccagcagtaccact
agtactctggtgccaagaggcacttgcccaaaggaaatagcaagccctgaattgtcactt
gaagatgaagttgtggataacagcgataacttgaggccaattgtcattgacggaagcaat
gtggctatgagccatggaaataaagaaggattttcctgtcggggaattcaactagctgtt
gattggtttctggaaaaaggccataaagatatcactgtgtttgtacctgcatggagaaaa
gaacagtctcgacctgatgcaccaattacagatcaagaaatcttgcgtaaattggagaaa
gaaaaaattcttgttttcaccccatctcgaagagttcagggaagaagagtggtttgctat
gacgatcgattcatagtaaaacttgcttttgactcagatggcattattgtatcaaatgac
aactatcgggatcttcaaaatgaaaaaccagaatggaagaagttcatagaggagcggctg
ctaatgtattcttttgtgaatgacaaatttatgcctcctgatgatcctttgggacgccac
ggtccaagccttgaaaatttcttacggaaaaggccagttattcctgaacataagaagcaa
ccgtgtccttatggtaaaaagtgcacctatgggcacaaatgtaaatattaccacccagaa
cgggcaaaccagcctcaaaggtcagtagcggatgagcttcgaataagtgccaaattatct
gctgtgaaaactatgagtgagggagccttggccaaatgtggcacagggccgtccagctcc
aaaggagaaatcggttctgaagtgaaacgcattgccccaaaacgtcagtcagatccaagc
attaggtcagtagctgtggagcctgaggaaaagttgtcagtagcccggaagtctgaggcc
agctctgtcccatctctggtttctgcattaagtgtaccaacgctccctccaccaaaaagc
catgcagctggggcattaaatactcgctctgcaagcagtccggtgccaggttcctcacag
ttcatgcatcagaaatcctcactggaacatatgtccagtgtgcaatatcctcctatacta
gtcaccaatagccatggcacctcggttagctataccgaccagtatcccaaatacgaatca
ttgggggaccatggctattactccttactcagtgatttctccaacctgagcataagtagt
atccgtaacacagattattacggggctgatacggaccaggggatgtattctagaaactcg
agcccctgtcctgacaattgcttaagccatacaagtaatgattcttactcctcttacaat
gacttgtatctgggtgtagcagatgccagtccagaagacaatgtgaagatccacagactg
ccatcgcaaaatcgtcttcagccttttgcccatggttaccatgaagccttaaatagagtt
cagagttatggaactgaagagcctaagcaagcccttcgcaaacagtcagtttctcactta
ggcctacatgcccagcacccagttgctggagcacggtccagttgtcccggagagtaccct
gtgcctcaaaacgtccatccgtcaactgcacaaccaagccgtgccttggtcatgacaaga
atggacagtatttccgactcacggctttatgaaagtaaccctgcgaggcagagaaggcca
cctctctgccgagagcagcatgctagttgggatccattaccgtgtgcgtcagactcttac
acgtatcactcatatccattgagtaacaacctcatgcagccgtgttatgaacctgtaatg
gtgagaagcatgcctgagaagatggagcaactctggaggaatccctggattgggatatgt
ggtgagccgcgggaacctcatatcatcccagaacatcagtatcaaacctacaagaacctc
tgcaatattttccctccaagcattgtcctttctgtgatggaaaagaatccccacatgaca
gatgcacaacagctggcagctgtgattgttgccaaattaagaacaggccgttaa
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