Apaloderma vittatum (bar-tailed trogon): 104275134
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Entry
104275134 CDS
T08559
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
104275134 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avit03400
]
104275134 (LIG3)
Enzymes [BR:
avit01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104275134 (LIG3)
DNA repair and recombination proteins [BR:
avit03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
104275134 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
Synaptonemal_3
mRNA_cap_enzyme
DUF3802
Motif
Other DBs
NCBI-GeneID:
104275134
NCBI-ProteinID:
XP_009869303
LinkDB
All DBs
Position
Unknown
AA seq
913 aa
AA seq
DB search
MAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGKIVPNPFTESGGDMKEWYHVKCVFEKL
EKARATTKKIEDITDLEGWEELQDGEKELINKYISESNSKASSTPKKKVIVQAKLTATGQ
LTTKDPLALVTPSPKKFSGFTAKPKNSEDVSANSSHKSSLSAKKCDPNHKDCLLREFRKL
CAMVAEKPSYNVKTQIIQDFLKKGSGGDGFHGDVYLTIKLLLPGVIKIVYNLNDKQIVKL
FSRIFNCSQEEMVRDLEQGDVSETIRLFFEQSKSCPPAAKSLLTIQEVDEFLIQLSKLTK
EDDQQSVLQQITRRCTGNDLKCIIRLIKHDLKMNAGAKHVLDALDPNAYEAFKASRNLQD
VVERVLKNQQEAEKVPGLKRTLSVQASLMTPVQPMLAEACKSIEYAMKKCPNGMYAEIKY
DGERVQVHKNGDHFSYCSRSLKPVLPHKVAHFKDFIPQAFPGGQSMILDSEVLLIDNKTG
KPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDISLMDRPLCERRKFLHDNMVEIPNRIL
FSEMKHVTKASDLADMITRVIREGLEGLVLKDTKGNYEPGKRHWLKVKKDYLNEGAMADT
ADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCSGGHDDATLARLQTELDMVK
ISKDPSKIPKWLKINKIYYPDFIVPDPKKAPVWEITGAEFSKAEAHTADGISIRFPRCTR
IRDDKDWQTATNLQQLKELYQLSKEKADFSVVAGEEDESTAGSSGENEGSSRSSTPHSAL
KSPLSKSPAKAQKPEGEMVLPRKRSLRVSVIGSPQKSEEKRGEKRKASDSPLSQQQPLLD
IFTGVKLYLAPSVKDFDKIRRYFIAYDGDLVPEFDVASATHVIGDIDENPGAKRVSPNWI
WECIRKRKLVAPC
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggcagagcagaggtactgcgtagactatgccaagcgtggcacggcaggctgcaagaaa
tgcaaggagaagattgtgaaaggaatggtgcgcatcggaaagattgttcccaatcctttc
acggaatcaggcggggacatgaaggagtggtaccatgtgaaatgcgtgtttgagaagcta
gagaaggcccgggccaccacgaagaagatcgaagatatcacagacttggaaggatgggaa
gagctacaggatggggagaaagaattaatcaacaagtacatctcagaatctaattccaag
gcttcgagtacaccgaagaaaaaagtgatagtccaagctaagctcactgctacaggacaa
ctgactacaaaagatccattagcgctcgtcactccatcaccaaaaaagttctctggcttc
acagccaagccaaagaattcagaagatgtctctgcaaattcttcccacaagtccagccta
tctgcaaaaaaatgtgatcccaatcacaaggactgcttgctgcgagagttccggaagctc
tgtgccatggttgctgaaaagcccagctacaacgtgaaaacgcagatcatccaggatttc
ctgaagaagggatctggaggagatggttttcatggtgatgtgtacctgaccattaagctg
ctgttaccaggtgtcattaaaattgtttacaacttgaacgataagcagattgtaaagctg
tttagtaggatttttaactgcagccaagaagaaatggtccgggatctggaacagggagat
gtttccgagaccatacgcctcttctttgaacagagcaagtcttgtcctccagcagctaaa
agtctgctgaccatccaagaggtagatgaattcctcatccagctgtcaaagctcactaaa
gaagatgaccagcaaagtgtgctgcaacagatcactcgcagatgtacgggcaacgacctg
aaatgcatcatcaggctcattaaacatgacttgaaaatgaatgctggagcaaagcacgtg
ttggatgccttggatcccaacgcttacgaggcgttcaaagcatcacgtaacctccaggac
gtggtagagcgagtcctgaagaaccagcaggaagctgagaaggtgccgggcctgaagcgc
acgctcagcgtgcaggcctcgctcatgactccggtgcagcccatgctggctgaagcctgc
aagtcaattgagtatgccatgaagaagtgcccgaatggcatgtatgcggagatcaagtac
gatggcgagcgggtgcaggtccataagaacggagatcatttcagctactgcagcaggagc
ctcaaacctgtcctcccacataaagtagcccattttaaggacttcatcccccaggctttc
cctggtgggcaaagtatgatcctggattcagaagttcttctgattgacaacaaaactggc
aaaccacttccttttgggactcttggtgtgcataagaaagctgctttccaagatgccaac
gtttgcttgtttgtgtttgactgcatctattttaatgacatcagcctgatggacaggcct
ctgtgtgaacgtcgcaagtttctccacgataacatggttgaaatccccaaccggatcctc
ttctcggagatgaagcacgtcacgaaagcttcagatctggcagatatgatcactcgagtc
atccgcgagggactggaaggactggtgttgaaagacacaaaggggaattacgaaccaggg
aaacgacactggctgaaagtgaaaaaggattacctgaacgagggtgccatggctgacaca
gcagacctggtggtgctgggagctttctatggccagggcagcaaaggcgggatgatgtcc
atcttcctcatgggctgctacgatcccaagagtgagaagtggtgcactgtcaccaagtgt
tccgggggccacgatgatgccaccttggcgcgtctgcagacggagctggatatggtgaag
atcagcaaggatcctagtaaaattccaaagtggctaaaaatcaacaagatctactaccca
gacttcattgtgccagatccaaagaaagccccggtgtgggagatcacaggggctgaattc
tctaaagccgaagcccacactgcagatgggatctccatccgcttcccccgctgcacccgc
attcgggatgacaaggactggcagacagccaccaacctccagcagctgaaggagctgtac
caactctccaaagagaaggccgatttcagtgttgttgctggcgaggaagatgagtctaca
gctggcagcagtggagagaacgaggggagttccaggtcttctaccccccacagcgctctt
aaaagtcccctgagcaagtcacctgcaaaagcccagaagccagaaggtgagatggtgctt
cctaggaagagaagcctcagggtgtcagtcattggatcccctcaaaaatcagaggagaaa
cgaggagagaagcgaaaagcatctgattctcctctttcacaacagcagccgctgctggac
atatttactggtgtgaagctatacctggcgccctctgtgaaggacttcgacaaaatccgg
cgctacttcatagcgtacgacggggatcttgtgcccgagtttgatgtagcctcagctacg
catgttataggggacattgatgagaatcctggtgctaagagggtgtctcccaactggatc
tgggagtgcatccggaagcggaagctggtagccccatgctag
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integrated database retrieval system
