Apaloderma vittatum (bar-tailed trogon): 104275437
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Entry
104275437 CDS
T08559
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03015
mRNA surveillance pathway
avit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104275437 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
104275437 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avit03019
]
104275437 (PABPC4)
03041 Spliceosome [BR:
avit03041
]
104275437 (PABPC4)
Messenger RNA biogenesis [BR:
avit03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
104275437 (PABPC4)
mRNA cycle factors
Stress granule specific factors
104275437 (PABPC4)
Spliceosome [BR:
avit03041
]
Complex C
Other components
Complex C specific factors
104275437 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
Motif
Other DBs
NCBI-GeneID:
104275437
NCBI-ProteinID:
XP_009869704
LinkDB
All DBs
Position
Unknown
AA seq
627 aa
AA seq
DB search
MNTAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEK
HEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERLSRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRP
TYYAPNQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPALRHLAPAGNPPASRGLPAA
AQRVGVGTAAQTLAPRPPVAAPAPXXXXXXXXXXXPHPAVQPLQAPQPAVHVQGQEPLTA
SMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKV
EEAVAVLQAHQAKKEAAQKVGVVAATS
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgaacacggctgccagcagctaccccatggcctcgctctacgtgggggacctgcacccc
gatgtcaccgaggccatgctctacgagaagttcagccccgccgggcccgtgctctccatt
cgggtctgcagggatatgatcacccgccggtccctcggctatgcctacgtcaacttccag
cagccggcagatgctgagcgtgctctagataccatgaattttgatgtgatcaaaggaaaa
cccattcgcatcatgtggtctcagagggacccttccttgaggaagtcaggggttgggaat
gtcttcattaagaacctggacaaatccattgataacaaggcactttacgacacgttctca
gcgtttgggaatattttgtcctgcaaggtggtgtgtgatgagaatggctctaagggctac
gcctttgtgcactttgagacccaggatgctgcagatagagccatcgagaagatgaacggc
atgctgctcaacgaccgcaaagtgtttgttgggaggttcaagtctcgtaaagagcgagag
gctgagttgggagccaaggcgaaggaattcaccaatgtttatattaaaaactttggggat
gacatggatgatgaaagactaaaggagctcttcagcaaatacggtaaaactctgagtgtt
aaagtgatgacagaccccactggaaaatccaaaggctttggctttgtaagctttgaaaag
catgaagatgctaacaaggcagtagaagaaatgaatggcaaggatatcaatgggaaaatg
gtatttgtaggccgagcgcagaagaaggtcgagcgccaggccgagctgaaacggaagttt
gaacagctgaaacaagagagactcagccggtaccagggtgttaacctgtacattaaaaac
ctagatgacactatagatgatgagaaactgaggaaggagttctcgccttttgggtcaata
acgagtgccaaggtgatgctggaagatggacggagcaaaggatttggctttgtctgcttt
tcctctccagaggaagctacaaaagctgtgacagagatgaatgggcgaattgtgggctca
aagccgttgtatgttgcgctcgcccaaaggaaagaagagcgaaaggcccatctaactaac
cagtacatgcagcgcattgctgggatgagagccttgcctgccaacacgatcattaatcag
ttccagcctgctgctggagggtatttcatgcctgctgtgccccaggctcagagcagaccc
acttactatgcacccaaccaaatgacgcagatgagacccaacccacgctggcagcaaggg
ggaagacctcaaggcttccagggaatgccaaacgccatgcgccagtctggaccgcggccg
gccctgcgccatctggcccctgctggcaatcctccagcctcgcgtggccttcctgctgct
gcccagcgtgtcggcgttggcaccgcagcacagactttagctcctcgtccgcccgttgct
gcccccgctcccagnnnnnnnnnnnnnnnnnnnnnnnnnnnnngcccccacccggccgtg
cagcccttgcaggcacctcagcctgcagtccatgtgcagggccaggaaccgctaacagcc
tccatgctggctgctgcccctccccaggagcagaaacagatgctgggagaacgtttgttc
cctctgatccaagctatgcaccccagccttgcggggaagatcacaggaatgctcctggag
atcgacaactcggagctgctgcacatgcttgagtctcccgagtccctccggtcaaaggtg
gaggaggccgtggcggtgttgcaggctcaccaggccaagaaagaagctgcccagaaggtc
ggcgtggttgctgctacctcttaa
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integrated database retrieval system
