Apaloderma vittatum (bar-tailed trogon): 104275790
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Entry
104275790 CDS
T08559
Symbol
PALB2
Name
(RefSeq) LOW QUALITY PROTEIN: partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03440
Homologous recombination
avit03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104275790 (PALB2)
03460 Fanconi anemia pathway
104275790 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avit03400
]
104275790 (PALB2)
DNA repair and recombination proteins [BR:
avit03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
104275790 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
104275790 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
104275790
NCBI-ProteinID:
XP_009870144
LinkDB
All DBs
Position
Unknown
AA seq
1231 aa
AA seq
DB search
SSDNVSPGADRHETSQVQTKPCSDLHAEKKTPVTYKHVPDFPDKEVRLQDSSQAESVQAS
QESLSCGIVGSAPEEKRPQTSRSLMKLRRRMKALASEGREPVRDVRLINTDETVKNQTAS
TEELRSPVFRRSSLPSTDENAQRASRPALEQREENGFTPPEAALGAVQDVPEDHVAPGGP
GLSLPAPRDSGDVWQTRPPGAVAVSDGHRPVQLCSENNDAVPLDTSGNGGEESSSIIKQM
DSESLCGEQEELHRLFNFTSENEALPADENSAVANESKSREGNESDVNSLNPFPTDLALR
NVKELLDNQRAEIQSRLPSPEKVTAPESALSSCTVVEGLLFPVEYYVRTTRRMSNCQRKV
DLDAVILSQLGKSKKSQRTKCKQKDANSDLPSQERVESDLESGIMQFPFLGAENDPANLS
SPQKSLPTSSSSSASLGSISQNSVTSTRREQRRSLRKQKGRRKSGCKPLVCQGSQELTEG
LDLVMLRESSSVLSNECQSETENCEANLGKSASDERKLSAAAVLRSGEPQVTVQPSGADP
PPGGSPGLGDCRQTLSEQGQNPLQNCDSLNLGDESFASLMGELEANLAVCQADKHPAEHL
KDQRVQGACRAEQLLAIGVPLRRSLRSSVRQRAAQVPAGTSAKRSTAKTAAXEQGRGAAA
GTAVHALPAMDSNPCDPLFSFRSPRWLVSRLGIRDFHLPDEDFGLLKQEKLESSSVNDLE
IFVPSVFAGGAALEDKQDADVDPEEKSLRSNLVLPFENRLPELPDAERPASKKELSTHEL
LFTPVGTVLAGAPSQHQSQIFSSVFPVVGATPAVLPPVHSEVFPNTPLVPPSHAGVRSSE
GVSAQGVGDGEGKDPAVARHLDSCGTGSAKKEEEQGAAFPSETERGPDNKSSEAVALEKC
RQAESKQQRSCRASPEQRTAVAEQWTPVPLDGPTAESLQLVSKLKDSSSSCAVDVSTMWW
EAGGCRELCVVTACESSVSLWKPLASGSWHKVYTWQIREIPVIQIVPLPDTGNLVCIALG
DLEIAEIRLLLCSSENDSFKQSLVKTGAIKAVLGLKGRRLVSSSRTGQEQQVDIVWLSET
GRSKDGQTLMPPEETVLAFAEVEGMRDALVGTTTVNDIVVWNLGTGQLLKKMHVGYSYPA
SVCHRAYSDSGLLFVVLSHPHAKESESCGNPVFRVIAFNPRTARSAAVVFSSLPPGHSGR
QVLGKIQMCQHHASFVELFGENPCNERSGAA
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
gttctagcgataacgtgtctcctggtgctgacagacatgaaacctcccaggtacagacta
aaccctgctctgatctccatgcagagaagaaaacacctgttacttataaacacgttcctg
acttccccgataaagaggttcgcctgcaggacagctcgcaggcagaaagcgtacaggcca
gccaggaaagcctgtcctgtgggatcgtgggctctgcccctgaggagaagagaccccaaa
cctccagaagcttgatgaagctgaggagacggatgaaggctttggcatcggagggaaggg
aaccagtgcgtgacgtgcgtctaatcaacactgatgagacagtgaaaaatcaaactgcca
gcacagaggagcttcggtcaccagtcttcaggcgaagcagtctccccagtactgatgaaa
acgctcagagagcatccagaccggcacttgagcagagagaggaaaacggtttcactcctc
ccgaggcagcattaggagctgtgcaagacgtgcctgaagaccacgttgctccaggagggc
ctgggctgtccctgcctgcaccgagggacagcggtgacgtctggcagacccggcccccag
gggctgtggccgtgtctgacggccacagacctgtacagctgtgttcagagaacaatgacg
cagttccgcttgacaccagtggtaatggaggagaagaatcctcaagtataattaaacaaa
tggacagtgagagcctgtgtggagaacaggaagaattacataggctcttcaatttcacgt
cagaaaatgaagcgttgcctgctgatgaaaatagcgctgtggctaatgagagcaaaagcc
gtgaaggaaacgagagtgacgttaacagcttaaatccctttcctacagatcttgctctgc
gcaatgttaaagaactgttggacaatcaaagggctgaaattcagtcaagacttccttctc
cagagaaggtgacagctcctgaaagtgccctgagctcttgcacggtggttgaagggcttc
tctttccagttgaatactacgtcaggacaactcgacgcatgtctaactgccagaggaagg
tggacctcgatgctgtaattctcagccagctgggcaaaagtaagaagagtcagcgaacta
agtgcaagcagaaagatgcaaattcagatcttccctcccaagaaagagttgaaagtgatt
tggagtcggggatcatgcagttccctttccttggtgcagaaaatgatccagcaaatttga
gtagtcctcagaaatctcttcccacgtccagcagtagcagcgcttcccttggatcgattt
ctcagaacagtgtcacgagcacaaggcgagagcagagacgatcactgaggaaacaaaagg
ggagaagaaagtctggctgcaaaccccttgtgtgtcaagggtcacaggaacttacagagg
gtttggatctcgtaatgctgagggagagcagtagtgtgctgtcaaatgagtgtcagagtg
aaacggaaaactgtgaggctaatcttggaaaatctgcttcagatgagagaaagctgtctg
ctgctgctgtgctcaggtctggagagccacaagtgaccgtacagccatcgggagctgatc
ctcctcctggagggagcccagggcttggcgattgccgtcagaccctgtcagaacagggtc
aaaatccacttcagaactgtgattctctgaacctaggggatgaaagttttgccagcctta
tgggagaactggaagccaacttagctgtgtgccaggctgataaacacccagcggagcacc
ttaaggatcagcgcgtacaaggagcctgcagggcggagcagctcctggcgattggtgtcc
ccctgcgccgctccctgcgttcctctgtgaggcagagagctgctcaggtcccagcaggta
cttctgcaaagaggagcacagctaaaactgcagcctgagagcaaggcaggggagcagcag
caggcactgctgttcacgccctgcctgccatggactccaatccttgtgaccctctcttct
ccttccgcagcccccggtggctggtctccaggctgggcatcagagactttcacttaccgg
atgaagacttcggactactaaaacaggagaaattagaatcttcctctgtgaatgacttgg
agatttttgttcccagtgtgtttgcaggtggtgcggctttggaggacaagcaagatgcag
atgtggatccagaagaaaaaagtcttagaagtaatttggttctgcctttcgaaaacagat
tgcccgagctacctgacgcagaaaggccagcgtccaagaaggagctttccacccatgagc
tgctctttactcccgtggggactgtcttagctggtgctcccagtcagcaccagtcgcaga
ttttctcatcagttttcccagttgtaggtgcaaccccggctgttttaccaccggtacaca
gcgaggtcttccccaacacgcctttagtccctccctcgcatgcgggggtgcgctcctccg
aaggggtgtctgcccagggtgtgggtgatggggagggcaaagaccccgctgttgcgcggc
acttggacagctgtggcacaggatctgctaaaaaagaggaggagcaaggtgcagcatttc
cttcagaaactgaaagaggtcctgataataaatccagcgaggctgtggccttggagaagt
gtcggcaggcagagagcaaacagcagagatcctgcagagcatctcctgagcagagaacag
ctgtagcagaacagtggactccagtgccgcttgatggcccgacagcagagagcttgcagc
tcgtgtcaaagctaaaggactcttcgagttcctgcgccgtggatgtgagcaccatgtggt
gggaagcaggtggctgccgggagctctgcgtggtgactgcctgcgagagttctgtctccc
tgtggaaacctctggcgtctggcagctggcacaaggtctatacttggcagatcagagaga
ttcctgtcatacagatcgttcctctgccagacaccggtaatctcgtgtgtatcgcactgg
gagatttggagattgcagaaataaggctcctgctttgttcttctgagaatgactcattca
agcaatcgctcgtgaaaactggagctataaaagctgttctggggctgaagggcaggaggc
tggtcagcagcagcaggactgggcaggagcagcaagtggatatagtgtggctgtcagaga
cggggaggagcaaggatggacagactttgatgccccccgaagaaacggttctagcttttg
ctgaagtagaaggaatgagggatgccttggtcggcaccaccaccgtgaatgacatcgttg
tctggaatctgggaacaggccagctcctgaagaagatgcacgttggttattcctacccag
cttccgtctgccatcgggcatattccgactctggccttctctttgttgttttaagtcacc
cacacgccaaagagagtgagtcctgtggaaaccccgtgttccgtgtcatcgccttcaacc
ccagaaccgcccggagcgcagcggtggtgttctcctccctcccccccgggcactctggaa
ggcaagtactggggaaaatccagatgtgccagcatcacgcctccttcgtggagcttttcg
gggagaatccgtgcaatgagcggagcggtgccgctg
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