KEGG   Apaloderma vittatum (bar-tailed trogon): 104276987
Entry
104276987         CDS       T08559                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A-like
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
avit  Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03030  DNA replication
avit03410  Base excision repair
avit03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:avit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104276987
   03410 Base excision repair
    104276987
   03420 Nucleotide excision repair
    104276987
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:avit03032]
    104276987
   03400 DNA repair and recombination proteins [BR:avit03400]
    104276987
Enzymes [BR:avit01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     104276987
DNA replication proteins [BR:avit03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    104276987
DNA repair and recombination proteins [BR:avit03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      104276987
SSDB
Motif
Pfam: POL2_thumb DNA_pol_B_exo1 DNA_pol_B DNA_pol_B_exo2 RNase_H_2 APP_N
Other DBs
NCBI-GeneID: 104276987
NCBI-ProteinID: XP_009871786
LinkDB
Position
Unknown
AA seq 1330 aa
SRQGCEREVSSFLAKKFQGKIAKLETVPKEDLDLPNHLVGLKRNYIKLSFNTVDDLVKVR
KEISPAVRKNRERDQASDVYTAMLSSALSGGSLSTEEDGASRKVASQLDNIVDMREYDVP
YHVRLSIDLKIHVAHWYNVRYRGSTYPPEITRRDDLVERPDPVVLAFDIETTKLPLKFPD
AETDQIMMISYMIDGQGYLITNREIVSEDIEDFEFTPKPEYEGPFCVFNEPDEAHLIQRW
FEHVQEMKPTIIVTYNGDFFDWPFVEARAAAHGINMYQEIGFQKDSQGEYKASQCIHMDC
LRWVKRDSYLPVGSHNLKAAAKAKLGYDPVELDPEEMCRMATEEPQTLATYSVSDAVATY
YMYMKYVHPFIFALCTIIPMEPDEVLRKGSGTLCEALLMVQAYHANIIFPNKQEQEFNKL
TDDGHVLDSETYVGGHVEALESGVFRSDIPCRFKMNPAAFDFLVQHVEKTLRHAIEEEEG
LPLDQVTNFQEVCDEIKVKLNSLKDVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAMVD
EATCAACDFNKPGANCQRRMTWQWRGEFMPASRSEYHRIQQQLESEKFPALSPEGAPRAF
HELSREEQAKYEKKRLADYCRKAYKKIHVTKVEERVTTICQRENSFYVDTVRAFRDRRYE
FKGLHKVWKKKLSAAVETGDASEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWY
SMEMAGIVCFTGANIITQARELIEQIGRPLELDTDGIWCVLPNSFPENFVIKSTNAKKPK
VTISYPGAMLNILVKEGFTNDQYQELQDPASLTYVTRSENSIFFEVDGPYLAMILPASKE
EGKKLKKRYAVFNEDGSLAELKGFEVKRRGELQLVKIFQSSVFEAFLKGSTLEEVYASVA
KVADYWLDVLYSKAANMPDSELFELISENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQ
MVKDAGLSCRFIISKKPEGSPVTERAIPLAIFQAEXXXXXXXXXXVRKHYLRKWLKSPSL
QDFNIRAILDWDYYIERLGSTIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDVYK
QKKINELFTSEGKRQVLANQPLEGTPSSQVGDIEDFGAAKPLQPVIPIANKRKRVPAADE
SQQMSQYLELSQSWREILGPPPPRGTTKEEWLVWLRXKKMLEARQRRERQKRRRLEDGGV
AAGGGVVRDALSKGLGSYLRRTARSILDLPWQIVQIAETSQPGLFRLWAVIGSDLHCIRL
SIPRVFYVNQRIPKPEEGPAYRKVNRILPRSNLVYNLYEYSVPEDMYQEHLNEINADLSA
PDIEGVYETQ
NT seq 3990 nt   +upstreamnt  +downstreamnt
tctcggcagggctgcgagcgagaagtgtcctccttcctcgccaagaagttccaagggaag
attgcgaagctggaaactgtgcccaaagaagacttggacctgccaaaccacttggtgggc
ctgaagaggaactacatcaagctgtccttcaacacggtggatgacctggtgaaggtgcgg
aaggagatctctcctgctgtgaggaaaaacagagagcgagaccaagcgagcgatgtctac
acggccatgctgtcaagtgccctgagcggtggcagcctgagcacggaggaggacggggcc
tccagaaaggtcgccagccagctggacaacatcgtggacatgcgggagtacgacgtgccc
taccacgttcgcctctccattgacctgaagatccatgtggcccactggtacaatgtgcga
taccggggcagcacctacccccccgaaatcacccgccgagacgacctcgtggagcgaccg
gatcctgttgttctcgccttcgacattgaaactaccaagctccctttgaagtttcctgac
gcagagacagatcagatcatgatgatctcctacatgattgatgggcagggctacctgatc
actaacagggagatcgtctccgaggatattgaagactttgagtttactcccaagccggag
tatgagggtccgttttgcgtctttaatgaaccagatgaagctcatttaatccagaggtgg
tttgaacatgtccaggagatgaaacccaccatcattgtcacatacaacggagacttcttt
gactggccctttgtggaagcaagagcagcagctcatggaattaatatgtatcaggagatt
gggtttcagaaggacagccagggagagtacaaagcatcccagtgcatccacatggactgt
ctaaggtgggtgaagagagacagttacctccccgtgggaagtcacaacctgaaagcagca
gcgaaagcgaaactgggttacgatccagtggagctggaccctgaagagatgtgccggatg
gctacggaggagcctcagaccctggccacctattcggtgtccgacgcagttgctacttat
tacatgtatatgaagtacgtgcaccctttcattttcgccttgtgcaccatcattcccatg
gagcctgatgaggtgttaagaaaaggctctgggacgctgtgcgaggcgctgctcatggtt
caggcctatcacgccaacatcatcttccccaacaagcaggagcaggaattcaacaaactt
acagacgacggccacgtgctcgactcggagacatacgtgggaggccatgtggaagccctg
gaatctggcgtcttccgcagtgacatcccctgccgcttcaaaatgaatcctgctgccttt
gacttcctggtgcagcacgtggagaagacgctgcggcacgccatcgaggaggaggagggt
ttgcccttggatcaagtcaccaacttccaggaggtctgtgatgaaatcaaggtcaaactg
aattctctgaaagatgttccgaacagaatcgagtgtccccttatctaccatctagatgtg
ggggccatgtaccccaacatcattctcaccaacaggctgcagccctcggccatggtggat
gaggccacgtgtgccgcctgcgacttcaacaagccgggtgccaactgtcagcgccgcatg
acctggcagtggagaggagaattcatgcctgccagccgcagcgagtaccaccgcatccag
cagcagctggagtccgagaagttccctgctctgtcccctgagggagcaccccgcgccttc
cacgagctctcccgggaagaacaggccaaatacgagaaaaagcggctggcagattactgc
cgcaaagcgtacaagaagatccacgtcaccaaggtggaggaacgagtcaccaccatctgc
cagagagagaactctttctatgtggacacagtgcgagctttcagggaccgccgctatgag
ttcaaggggctgcacaaggtgtggaagaagaagctgtctgcagcggtggagacaggagat
gcctctgaagtaaagcgctgcaagaacatggaaatcctgtatgagtccctgcagctggcc
cacaagtgcatcctcaactccttctacggctacgtcatgcgcaagggagctcgctggtac
tccatggaaatggctggcatcgtctgcttcacgggagccaatatcatcacccaggccagg
gaactgatcgagcagattgggaggcctctggaactggataccgacgggatttggtgtgtc
ctccccaacagcttccccgagaactttgtcatcaagtcaacaaatgccaagaagccgaag
gtgacgatctcctacccgggtgccatgctgaacatcctggtgaaggagggcttcacgaat
gatcagtaccaggaactgcaggacccagcctctctcacttacgtcacacgctcggagaac
agcatcttttttgaggtggatggaccatacctggccatgatcctcccagcttccaaggag
gagggcaagaagctgaagaaaaggtacgctgtgttcaacgaggacgggtccctggccgag
ctgaagggatttgaggtgaagcgccgaggagagctgcagctggtgaagatattccagtcc
tctgtgtttgaagccttcctgaaaggcagcaccctggaggaggtctatgcttccgtggcc
aaggtggccgattactggctggatgtgctctacagcaaggcagccaacatgcctgattca
gagctgtttgagctgatctcggagaaccggtcgatgtcgcgcaagctggaggactacggg
gagcagaagtccacctccatcagcactgccaagcgcctggcagagttcctgggggaccag
atggtgaaggatgcggggctgagctgccgcttcatcatttctaagaaaccagaagggtct
ccggtcaccgagagggccattcccctcgccatcttccaagccgagnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnngtgcgtaaacactacctccggaagtggctgaagagcccttcgctg
caggacttcaacatccgcgcgatcctggactgggactactacatcgagagactgggcagc
accatccagaaaatcatcaccattccagcagccctgcagcaggtaaagaacccggtgcca
cgggtccgtcacccagactggctccacaagaagctcctggagaaaaacgatgtgtacaaa
cagaaaaaaatcaatgagctcttcacttcagagggcaagagacaggtcctggccaaccag
cccttggaagggacaccgagctcacaggttggtgacatagaggactttggggctgccaag
ccccttcagccagtgattcccattgcaaataagcggaagcgggtccctgcagcagacgaa
agtcaacagatgtcccagtacctggagctatcccagtcctggcgagagatcctgggtcca
cctcctccccgcggcaccaccaaggaggagtggctggtctggctgcgcnntaaaaaaatg
ctggaggcgcggcagcggcgggagcggcagaagcggcggcgcctggaggacggtggggtg
gcagcgggcggaggagtggtccgcgacgccctctccaaagggctgggcagttacctgcgc
aggaccgcgcgcagcatcctcgacttgccctggcagatcgtgcagattgctgagaccagc
cagcctgggctgttccggctgtgggcagtgattgggagcgacctgcactgcatccggctg
agcatcccccgggtcttctacgtcaaccagcgcattccaaagccggaggagggaccagcc
tacaggaaggtgaacaggatcctgccccgctccaacctggtgtacaacctgtacgagtac
tccgtccccgaagacatgtaccaggagcacctcaacgagatcaacgcagacctctcggct
cccgacatcgagggcgtgtacgagacgcag

DBGET integrated database retrieval system