Apaloderma vittatum (bar-tailed trogon): 104277892
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Entry
104277892 CDS
T08559
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104277892 (PRPF4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
avit03041
]
104277892 (PRPF4)
Spliceosome [BR:
avit03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
104277892 (PRPF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
ANAPC4_WD40
PRP4
Beta-prop_EML
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
NBCH_WD40
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_Vps41
WD_LRWD1
Beta-prop_IFT140_1st
WD40_like
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
104277892
NCBI-ProteinID:
XP_009872982
LinkDB
All DBs
Position
Unknown
AA seq
512 aa
AA seq
DB search
ATKSKPAEEGDAPPAKRAPIFYGSLEEKERERLAKGESGLLGKEGMKAAMEAGNINISSG
EVFDLEDHMSERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERR
ERLRNILSVVGTDALKKTRKDDDRSKKSKDEYQQTWYHEGPRSLKTARLWIANYSLPRAA
KRLEEARLLKEIPEATRTSQRQELHKSLRSLNNFCSQIGDDRPLSYCHFSPNSKLLATAC
WSGLCKLWSVPDCNLVHTLRGHSTNVGAIVFHPKSTVSIDKKDVNLASCAADGSVKLWSL
ESDEPVADIEGHSMRVARVMWHPSGRFLGTTCYDHSWRLWDLEAQEEILHQEGHSKGVYD
IAFHTDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGVNFSPNGYHVATGSGDNT
CKVWDLRQRKCIYTIPAHQNLVTGVKFEPNHGNFLLTGAYDNTAKIWTHPGWSPLKTLAG
HEGKVMGLDISLDGQLIATCSYDRTFKLWTAE
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
gccacaaagagcaagcctgctgaagagggcgatgctcctccagccaagcgagcccccatc
ttttatggcagcctggaggagaaggaaagggagcgtctggcaaaaggagaatcggggctg
ctgggaaaagaagggatgaaagctgcgatggaggctggcaacatcaacataagcagcggt
gaggtctttgatctcgaggaccacatgagcgagcggcaggccgaggtgctggctgagttc
gagcgcaggaagagagcccggcaaatcaacgtctccaccgacgactcggaagtgaaagcc
tgtttgcgagcgctcggggagcccatcacgctctttggagaaggtcctgccgaacggagg
gagaggttaagaaacatcctctcagtggtcggcacagacgcattaaaaaagaccaggaaa
gacgatgacaggtctaaaaaatccaaagatgagtatcagcaaacctggtaccacgaagga
ccccgcagtctgaaaacagcgaggctgtggatcgctaactactcgctccccagggcagcg
aaaaggcttgaagaagcccgcctgctcaaagagattccagaggcaaccaggacatcacag
agacaggagctacacaaatccctgcggtccttgaacaacttctgcagtcagattggggat
gatcgcccactgtcctactgccacttcagcccaaattccaaactcctcgcaacagcctgc
tggagcgggttgtgcaagctctggtctgtgcctgactgcaaccttgttcacaccttacga
ggacatagcaccaacgtaggagcgattgtcttccatcccaaatccaccgtctccatagac
aagaaggacgttaacctggcctcttgtgcggccgatgggtccgtcaaactctggagcctt
gaaagcgatgaaccagtggcagatattgaaggccacagcatgagagtggcacgtgtgatg
tggcacccgtccgggcggttcctgggtactacctgctacgatcactcgtggcgcttgtgg
gacttggaagctcaggaagagattctccatcaggaggggcacagcaaaggggtctacgac
atcgcctttcacacggacggctctctcgccggcactgggggactggatgcttttggccgg
gtgtgggacttgcgcacaggacgctgcatcatgtttctagaaggtcacctgaaggagatc
tacggggttaacttctccccaaatggataccacgtggcaactggcagtggtgacaacacc
tgcaaggtgtgggacctccgccagaggaagtgcatctacaccattcctgcccaccagaac
ctggtgaccggggtgaaattcgaacccaatcatggtaacttcctgctcacgggtgcgtac
gacaacactgccaagatctggactcaccccggctggtcccctctgaagacgctggccggc
cacgagggcaaggtgatgggactggacatctcccttgacggccagctgatagccacctgc
tcctacgacagaaccttcaagctgtggacagcagagtag
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