Apaloderma vittatum (bar-tailed trogon): 104278423
Help
Entry
104278423 CDS
T08559
Symbol
ABCA1
Name
(RefSeq) ATP-binding cassette sub-family A member 1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit02010
ABC transporters
avit04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
104278423 (ABCA1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
104278423 (ABCA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
avit02000
]
104278423 (ABCA1)
Transporters [BR:
avit02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
104278423 (ABCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
AAA_23
Motif
Other DBs
NCBI-GeneID:
104278423
NCBI-ProteinID:
XP_009873695
LinkDB
All DBs
Position
Unknown
AA seq
1603 aa
AA seq
DB search
MAFWTQLGLLLWKNFTYRRRQTFQLLIEVAWPLFIFFILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWIQGIICNANNPCFRYPTPGESPGIVGNFNASIVSRLFSDAKRLLLYSQQDT
SIKDVQKVLGKLRKLGNSAVSDLKLRDFLIDNETFSDFLRQNVSMPSSAIEELLNAEVNL
RQVIVSGYRMRLQDFCNSLALSEFLTVQNQTVAKDSEVFVCTLSKEKLHAAEQAFRANLN
PLKPLQRQISFNSSLRDLSETVETLRGSLRKLVEELLSMKSWSDMRQEVMFLTNVNASNS
STQIYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNSTEDDVTNFYDNSTTPYCN
ELMKNLESSPLSRIIWRALKPLLIGKILYTPDTPAIRKVMTEVNRTFQELGVFRDLGGMW
EEISPKIWTFMESSQEMDLIRTLLKGKALWDLHLPASNWTVEDVARFLSKHPEDFETAGD
SVYTWVDAFNETDRAIQTISRFMECVNLDKLEPVATEVQLINKSLELMDERRFWAGIVFT
EIAPNSVELPQHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDV
VEQAIIRVQTGTEKKTGVYVQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGI
VYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLMSAGLLVLILKMGNLLPYSDPSVVF
VFLSIFGVVTILQCFLISTVFSRANLAAACGGIVYFTLYLPYVLCVAWQDYISFSLKIFA
SLLSPVAFGFGCEYFALFEEQGVGVQWDNFFESPLEEDGFSITTSAVMMLFDTFLYGVMT
WYIESVFPGQYGIPRPWYFPFTKSYWFGEEPQDREHPHPDQKGPSEVCKEEEPMHLSLGV
SIQNLVKVYRDGKKVAVDGLTLNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAFI
LGKDIRSELSTIRQNLGVCPQHNVLFDLLTVEEHIWFYARLKGLPEKKVKEEMEQMAMDV
GLPHKLKARTNKLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQ
GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVDSSLS
SCRNSSSTVSYLKKDDSVSQSSSDAGLGSDHESDTLTIDVSAISNLITKHVPEARLVEDI
GHELTYVLPYKAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVADDSGVDAE
TSDGTLPARRNRRVFGDRQSCLRPFTEDDAYDPNDSDIDPESRETDLLSGIDGKGSYQMK
GWKLTQQQFMALLWKRLLIAKRSRKGFFAQIVLPAVFVCIALMFSLIVPPFGKYPSLELQ
PWMYDEQYTFISNDAPEDTGTQKLLDALLNKPGFGTRCMQGHSIPNTPCTVGQREWTTTS
VPDSVLDIFLKGNWSMENPSPSCECSSEKIKKMLPVCPPGAGGLPPPQREQDTADILQNL
TGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGASSSLMLPPSHEVTDAIKQVKK
ILELAQGSSGDRFLNSLSSFMKGLDTKNNVKVNSPVLTAVPAV
NT seq
4812 nt
NT seq
+upstream
nt +downstream
nt
atggctttctggacgcagttgggattgctgctatggaaaaactttacctacagaagaaga
cagactttccagctgctgatcgaagttgcctggcctctgtttatcttcttcatcctgatc
tctgtaagactttcatatccgccctatgagcaacatgaatgtcacttcccaaacaaagct
atgccttcagcgggaaccttgccatggatacaggggatcatctgcaatgccaacaaccct
tgctttcgctatccaactcctggagaatcccccggtatagttggaaacttcaatgcctcc
attgtttcccgcctgttctcggatgccaagaggttgctcttgtacagccaacaggacacg
agcataaaggatgtccagaaggtcctgggaaaactgcgcaaattgggaaactccgctgtc
tcagacttgaaacttcgggatttcctgattgacaatgagacattttcagacttccttcgt
cagaatgtgtccatgccatcatctgcaatagaagagctgctgaatgcagaagtcaacctc
cgacaggtcattgtgtctggttaccgaatgcgactgcaggatttctgcaatagcttagca
ctgtctgaatttcttacagtccaaaatcagacagtagccaaggactcagaagtctttgtt
tgcaccttgtcgaaggaaaaactccatgcagctgaacaagccttccgtgcaaacctgaat
cctttgaagccccttcagagacaaatttctttcaattcttccttgcgggatctgtcagaa
actgtggaaactttgagagggagccttaggaagcttgttgaagagttgctgagcatgaag
agctggagcgacatgaggcaagaggtgatgttcctaaccaatgtgaatgcctccaactct
tctacacaaatctaccaggctgtgtcacgcattgtgtgtggccatcctgagggtggaggg
ctcaaaattaaatccctcaactggtatgaggataacaattacaaagcactgtttggagga
aacagcactgaagacgatgtaactaacttctatgataactccacaacaccctactgcaat
gagctgatgaagaacctggaatccagcccgctttccaggattatctggagggctttgaaa
cccttgctgattgggaagatcttatacactccagacacaccagctataaggaaggtcatg
actgaggtgaacaggacattccaggagctgggtgtgtttcgtgacctcggagggatgtgg
gaggagataagcccgaaaatttggacatttatggaaagtagtcaggaaatggacctcatt
cggacactgctgaaaggcaaagctctctgggacctgcacttgccagcttccaactggaca
gtggaggatgttgcccgtttcctgtcaaagcatccagaggactttgaaacagcaggtgac
tcagtgtatacctgggtggatgccttcaacgagacagaccgggctatccagaccatctcc
cgcttcatggagtgtgtgaacttggacaaactggagcctgtggccacagaagtccaactt
ataaacaagtcattggagcttatggacgaaaggaggttctgggctggcatagtcttcact
gaaatagctcctaacagcgtagagctccctcaacacgtgaaatacaagatacgcatggac
attgataatgtggaaaggaccaacaagatcaaggacgggtactgggatcctggtccccgt
gctgacccctttgaggacatgcgctatgtttggggaggctttgcctacctgcaggatgtg
gtggaacaggcaatcatcagggtacagacaggcacggagaagaagacgggagtttatgtg
cagcagatgccctacccatgttatgtggatgacatatttctgcgtgtcatgagccgctcc
atgcctctcttcatgactctagcctggatctactcagtggctgtgataattaagggcatt
gtatatgagaaggaggcccggctgaaggagacgatgaggattatgggacttgacaacggc
atcctgtggctaagctggttcattagcagcctcattcctctcctgatgagcgcaggcctg
ctggtgctgatccttaagatgggaaatctactgccttacagcgaccctagcgtggtattt
gttttcctctcgatctttggtgttgtgaccatcctccagtgcttcctcatcagcactgtg
ttctccagagccaacttggcagctgcctgtgggggtattgtctatttcacgctgtacctg
ccttatgtgctgtgtgttgcctggcaggactacatcagcttctcactcaagatctttgcg
agcctcctgtctccagtagcctttggctttggttgtgagtactttgcactgtttgaggag
caaggagttggtgttcagtgggataacttctttgagagcccattggaagaagatggcttt
agcatcaccacatctgctgtcatgatgttgtttgacaccttcctgtatggggtcatgacg
tggtacattgagtctgtcttcccaggccagtatggaattcccaggccatggtactttcct
ttcacaaagtcctattggtttggcgaggagccacaggacagggagcaccctcatcctgac
cagaaggggccttcggaagtctgcaaggaagaagaacctatgcatctgagccttggtgtt
tctatccagaacctggtcaaggtctatcgcgatggcaagaaagttgctgtagatggtctc
acactgaatttctatgaaggacaaattacctcgtttctgggacataatggagcaggaaaa
actactaccatgtccatcttgactggtttgttccccccaacctctggtacagctttcatc
ctgggcaaagatatccgctctgagctcagcaccatcagacagaacctgggtgtctgtcca
caacacaatgtgctgtttgacttgctgactgtggaggagcacatctggttctacgctcga
ctcaaagggctgccagaaaagaaggtgaaagaggagatggaacagatggcaatggatgtg
ggtttgccacacaaactgaaagctaggacaaacaaactctctggtggcatgcagaggaaa
ctctcagttgccttagcctttgttggtggctccaaagttgtcattctggatgaacctaca
gctggggtggacccttattctcgcagagggatatgggaattgcttttgaagtaccggcaa
ggtcgcactatcattctttccacacaccacatggatgaagcagacattctaggagaccgg
attgccataatttctcatggcaagctctgctgtgttggctcttcactcttcctgaagaac
cagctgggaacaggctattatttgacccttgtcaagaaggacgtggattcctctctgagt
tcctgccgaaacagcagtagcacagtgtcctatctgaaaaaggatgacagtgtctcccag
agcagctctgatgctggccttggcagtgaccatgaaagtgacacactgacaatagatgtc
tctgcaatttcaaatctcattacaaaacatgttcctgaggccaggctggtggaggacatt
ggccatgaattaacctatgtcttgccatacaaggctgctaaagagggagcttttgtggag
ctgttccatgaaattgatgaccgactctctgatcttggtatctccagctatggcatctct
gaaaccaccctggaggagatcttcctgaaagtggctgatgatagtggtgtggatgcagaa
acctcagatgggacattgccagccagaagaaacagacgtgtgtttggggacagacagagc
tgtcttcgtccttttacagaagatgatgcatatgatcctaatgattcagacatagatcca
gaatccagagagacagaccttctcagtggcatagatgggaaaggctcctaccagatgaag
ggctggaagctcacccagcagcagttcatggctctgttgtggaagaggctgctcattgcc
aagaggagccggaagggcttctttgctcagattgtgttgccagctgtctttgtgtgtatt
gctctcatgttcagcctgattgttcctccctttgggaagtaccccagcctggaattgcag
ccctggatgtatgatgagcagtacacttttattagcaatgatgctccagaagatacaggc
actcagaagcttttggatgcccttctcaataagcctggttttgggacacgctgtatgcag
ggacactccatcccaaacactccttgcactgtgggacagagggaatggaccactacttca
gtgccagactcggtcctggacatctttctgaaaggcaactggagcatggagaacccttct
ccatcttgtgagtgcagcagtgagaagatcaagaagatgttacctgtgtgtcctcctggt
gcaggcggcctgccacccccacagcgtgagcaagacactgctgacatcctccagaatctg
acaggccgcaatatatccgattacctagtgaagacctacgcacaaatcattgggaaaagc
ttaaagaataagatctgggtgaatgagttcaggtatggtggtttttccttgggagccagc
agttccctcatgcttccaccaagccatgaagtcacagatgccattaaacaagtgaagaaa
atcttggaactagcacagggaagttctggagatcgatttctcaacagcttgtcaagtttc
atgaaaggcctggatacaaagaacaacgtgaaggtaaattcaccagttctcactgctgtg
cctgctgtttga
DBGET
integrated database retrieval system
