Apaloderma vittatum (bar-tailed trogon): 104279111
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Entry
104279111 CDS
T08559
Symbol
HELZ
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avit03019
]
104279111 (HELZ)
Messenger RNA biogenesis [BR:
avit03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
104279111 (HELZ)
3'-5' decay
Other 3'-5' decay factors
104279111 (HELZ)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_19
zf-CCCH
AAA_30
UvrD-helicase
ResIII
PhoH
PAM2
zf_CCCH_4
Mov-10_helical
AAA_22
zf-CCCH_4
Bac_DnaA
AAA_7
AAA_16
Mg_chelatase
AAA_5
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
104279111
NCBI-ProteinID:
XP_009874594
UniProt:
A0A091NS95
LinkDB
All DBs
Position
Unknown
AA seq
1283 aa
AA seq
DB search
MADRRPEKSCEQARESLKQQDYEVAVKHCTEALLSLSQYPPAQLPEACQAEIDRIKIETL
LYRIASFLQLKKYGQADEDCRHVLGEGLAKGDGSFRAVLCCMHLKGKLQIVSNVLSKSLM
GESLNGMVTKDLTRLKTLLAETEAAGKVPSGYHVEDLEEGSGDGWQFRPPPRGVTSSEEY
TLCKRFLEQGICRYGAQCTSAHSQEELTEWQKRYASRLIRLKQQKENKQCSGSYMETLIE
KWMNSLSPEKVLSECVEGVRVEHNPELSVTVTTKKSHQTWTFALTCKPARMLYRVALLYD
AHRPHFSIVAISAGDSTTQVSQEVPENCQEWIGGNMVQNGIDHYIYKVSIAFNTEIFGTF
RQTVVFDFGLEPVLMQRVMIDAASTEDLEYLMHARQQLLTTAKRWDSTSKTIVEFEPNET
TELEKSLLTRYQIPLSADQLFTQSVLDKSLTKTNYQSRLHDLLYIEEIAQYKEVSKFNIK
VQLQIVASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVTK
EKSAQTQGTKEKVYEAAIEEKTKDYIFLRVSRECCEELNLRADCEMQVELQFQLNRLPLC
EMHYALDRIKDNSILFPDVSMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLSIQL
PPVLIIGPYGTGKTFTLAQAVKHILQQQDTSRILICTHSNSAADLYIKDYLHPYVEAGNP
QARPLRVYFRNRWVKTVHPVVHQYCLISSTHSTFQMPQKEDILKQRVVVVTLNTSQYLCQ
LDLEPGFFTHILLDEAAQAMECETIMPLALANKNTRIVLAGDHMQLSPFVYSEFARERNL
HVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYPL
TFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQV
FRIRAELRKKRLSDVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKRKEQLLEDST
EDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENESLHGI
TFEQIKAQLEALELKKTYVLNPLAPEFIPRALRHQHSVNTTKQQQSPPKGKVHHHNQNDH
FPPDGIVQPNPSVLIGNPIRAYTPPPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAV
YGGNMVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLQAHGRGSPIPYGLGHHSP
VSIGQQQQLQHQDKEQHEQSRNG
NT seq
3852 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagaagaccagagaagtcatgtgaacaagcacgtgaatctctgaagcagcag
gactatgaagtggcagtgaagcattgcacagaggctctcctctccctcagccagtatccc
ccagctcagctcccggaggcatgccaggcagagatcgaccgcatcaaaatcgagacgctt
ctctatagaatcgcttcctttttacaacttaaaaaatatgggcaagcagatgaagactgt
aggcatgtgctgggagaggggctggccaagggagatggatctttccgtgcagtgctctgc
tgcatgcatcttaaagggaagctgcagattgtgtctaatgttctttccaaatcactgatg
ggtgaatcactgaacgggatggtaactaaagatctgacacgactgaaaacacttcttgct
gaaacagaggcagctggtaaagtaccgtcaggatatcacgtggaagatttagaagaaggg
tcaggggatggctggcagttccgccctccacccaggggagtcacaagcagtgaagaatac
acactatgtaaaagatttttagagcaagggatctgcaggtacggtgcacagtgtacttca
gcacattcccaggaagagctaacagaatggcaaaaacgatatgcttcccgcttgatcaga
ttaaaacagcagaaggaaaacaaacaatgttcgggcagttatatggaaaccttgattgag
aaatggatgaattcgttatctcctgagaaagtgcttagtgaatgtgtagaaggagtgaga
gtagaacataatcctgagctatcggtaactgtcaccaccaaaaagtctcatcagacatgg
acatttgctctcacttgtaagcctgcaagaatgctgtatcgagtggcattgctttatgat
gcccatcgtccacattttagtatcgttgcaatatctgctggagacagcactacccaggta
tcacaagaagttccagaaaattgtcaggaatggataggaggaaacatggtccagaacgga
atagatcattatatatacaaagtcagtatagcctttaacacggaaatctttggaactttt
cgccaaactgttgtgtttgactttggattagaaccagtcctcatgcaacgagtaatgatt
gatgctgcttcaactgaagatcttgaatacctgatgcatgcacggcaacagctactaacc
acagctaagcgttgggattctacttctaagactattgtagaatttgagcctaatgaaact
actgagttggagaagagccttcttaccagataccaaatccctctgtctgctgaccagcta
tttacacaatctgtcctggacaaatcattgaccaagaccaactatcagtcacggctacat
gacctcctttatattgaggaaatagcacagtataaggaagttagcaagttcaacataaaa
gtgcaattgcagattgtagcaagcttcatgctcaccggagtttctggtggtgcaaagtat
gcccaaaatgggcaactttttggccgctttaagctcactgaaacgctttcggaagacact
ttggctggacggctggtgatgaccaaagtcaatgctgtttatttattgcctgtcactaaa
gagaagtcggcacagacccaaggaaccaaagagaaggtttatgaagcagctattgaggag
aaaacaaaggattatatcttcttgagggtatccagggaatgctgcgaagaacttaatctt
cgagcagattgtgaaatgcaggttgaacttcagtttcagttaaatcgcttacccctctgt
gaaatgcattatgccttggacaggattaaggacaacagtattttgtttccagatgtcagc
atgactcccaccataccctggagtcccaacagacaatgggatgagcagttggaccctcga
ctaaatgcgaagcagaaagaggctgttctggctatcactactccactttcaatacaactg
cctcctgttcttatcatcggtccctatgggacaggaaaaaccttcactctggctcaggca
gtcaagcacatactccaacaacaggatactagcaggattctcatttgcacccattctaat
agtgctgctgatctctacataaaggattatttacatccatatgtagaagcaggcaatccc
caggcaagacctctcagggtatatttcagaaatcgctgggtaaagactgtccacccagtt
gtgcatcagtactgtttgatttcaagcacacattccacctttcagatgccacagaaagaa
gacattcttaagcaacgcgttgtagttgttactttaaatacatcacagtatctatgtcaa
ctggatctcgaaccagggttttttacacacattctgttagacgaagctgcgcaagctatg
gagtgtgaaactatcatgcctctagcgttggctaataaaaacacaagaattgtcttggct
ggagaccatatgcagctcagtccttttgtctacagtgaatttgccagggaaagaaacctt
catgtttcattgcttgatcggctctatgagcactaccctgcagaatttccatgcaggatc
ttgctgtgtgagaactatcgctcccatgaagctatcatcaattacacatctgaacttttc
tatgaaggcaaattgatggcaagtggaaagcagccagcacacaaagatttctaccctttg
actttcttcacagcacgtggggaagatgtgcaagaaaaaaatagtacagctttttacaat
aatgcagaggtatttgaagtagtagagcgcgttgaagaattaagaagaaaatggcctgtt
gcctggggcaaattggatgacggcagtataggtgtcgtaactccttacgctgatcaagtg
ttcagaattcgggctgaactccgcaaaaaaagactgtctgatgtcagcgtagagagagtg
ctgaatgttcagggaaaacagtttagagttttgtttctcagcacagtacgaacacggcat
acgtgcaaacataagcaaacaccaattaaaaggaaggagcagttactggaggattcaaca
gaagacttggattatggttttctgtctaattacaaacttctcaacactgccattaccaga
gcacaatccttggtagctgtggtgggagatcctattgctctatgttccattggaagatgc
aggaaattttgggaaaggtttattgccctctgtcatgagaatgaaagtctccatggtatc
acgtttgaacagatcaaagctcagctggaagctttggagttaaagaaaacttacgtattg
aacccactggctcctgagtttatccctcgagctcttcggcatcagcattcagtgaatacc
accaaacagcagcagtcgccaccaaagggcaaggtccatcatcataaccagaatgaccat
ttcccacccgatggaattgttcagcccaacccttctgttctaattggaaatcctatccga
gcatatactcctcctcctcctcctcctctgggacctcaccccaatctggggaaatctcca
agtcctgttcaaaggatagatccacacactgggacaagtattctatacgtacctgccgtc
tatggaggaaacatggtcatgtctgtgcctttgcctgtaccatggacagggtatcagggt
aggtttgcagttgaccctcgaatcattactcaccaagcagctatggcatataatatgaac
ctgttacaggcacatgggcgtgggtctcctatcccttacggcctgggacatcattccccg
gttagcataggacaacagcagcagcttcagcatcaagacaaggagcaacatgaacaaagt
cgaaacggttag
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integrated database retrieval system
