Apaloderma vittatum (bar-tailed trogon): 104279219
Help
Entry
104279219 CDS
T08559
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104279219 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
avit03041
]
104279219 (PRPF40A)
Spliceosome [BR:
avit03041
]
Complex A
U1 snRNP components
U1 related factors
104279219 (PRPF40A)
Complex B
104279219 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
104279219
NCBI-ProteinID:
XP_009874725
LinkDB
All DBs
Position
Unknown
AA seq
870 aa
AA seq
DB search
MGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQMPGMMQSVMPGMMM
SHMSQAAMQPTVPPGVNSMDAQVGVTPPGTQTTHPVVCAAQQTATTNSSVNEEHSKQKST
WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTK
ESRWAKPKELEDLEAMIKAEENSTKPEESAPATSTPAAAAEATNATTAATTAAEGAAAXX
XXXXXXXXXPPPSAPAAAPEAETAAASSGVENESSGAASAEEQGQAASASAAQEQGGETA
ANAADDSSKQDASADAASKKEDDDSQPVKKTYTWNTKEEAKQAFKELLKEKRVPSNASWE
QAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEK
MTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKN
ILDNMANVTYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEK
QKSLLRERRRQRKNRESFQLFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGST
ALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRATTLDAGN
IKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRDRFVK
EPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSESED
DDSHSKKKRQRSESRSASERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDIEREKDK
KDRESEKDRARQRSESKHKSPTKKRPGKDS
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggacacccaggcatgccacattatcctcccatgggaatgcaccctatgggtcagaga
ccaccaaatatgcctccagttccccacggcatgatgcctcagatgatgccccccatggga
ggaccaccaatggggcagatgcctggcatgatgcagtcagtaatgcctggaatgatgatg
tctcacatgtcccaagctgctatgcagcctacagttccgccaggagtgaacagcatggat
gcgcaagtaggtgtaacacctcctggaactcagacaacgcatcccgtagtttgcgcagcc
cagcaaacggccacaaccaacagttctgttaacgaagagcactctaaacagaaatctacc
tggacagaacacaaatcacctgatggaagaacgtattactataatactgaaacaaagcaa
tctacgtgggagaagccagatgatctcaaaacacctgctgagcaattgttgtctaagtgt
ccctggaaagaatacaaatctgattctggaaagccctactattacaattcccagacaaag
gaatcacgctgggcaaaacccaaagagctcgaggatcttgaagcaatgattaaagctgaa
gaaaacagtacaaagcctgaagagtcagctccagccacatctactccagctgccgcggcg
gaagcaacaaacgcaaccactgcggccacgactgctgctgaaggagccgcggctgnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnccccccgccctcggcgcccgccgcagcccctgaa
gcagaaactgcggcggcttcttcgggggtggaaaacgagagctccggtgcagcctcagct
gaggaacagggacaagcagcttctgcatctgctgcgcaggaacagggtggagaaacggca
gctaacgcagcggatgactcttccaagcaggatgcctcggcagatgctgcttcaaagaaa
gaggatgatgattcccaacccgttaaaaaaacctatacgtggaatacaaaggaagaagca
aaacaagcttttaaagaactgttaaaagaaaagcgagtaccatccaatgcttcttgggag
caagctatgaaaatgatcattaatgatccgagatacagtgctttggcgaaattaagtgaa
aagaagcaagcctttaatgcttacaaagttcagacagaaaaagaagagaaagaagaagca
agatcaaaatacaaagaagctaaagaatccttccagcgttttcttgaaaaccatgaaaag
atgacatccacaacaagatacaagaaagctgaacaaatgtttggggagatggaagtctgg
aacgcgatatctgagcgggatcgtctcgaaatttatgaagatgtcttgttttttctgtcg
aagaaagagaaggaacaagccaaacagttacgcaagaggaattgggaagctttgaagaac
atactggataacatggctaatgtcacatactgtactacttggtcagaggctcagcagtat
ctgatggacaaccctacgtttgcagaagatgaagaacttcagaacatggacaaggaggat
gcgttgatctgctttgaggaacatatcagggcgttggaaaaagaggaggaagaagaaaaa
cagaaaagcctgcttcgagaaagaagacggcagcgtaaaaacagagaatcttttcagctg
tttttagatgagctgcatgagcacggacaactacattcaatgtcctcttggatggagctg
tacccaaccataagctctgacatcagattcaccaacatgctcggtcaacctggatcgaca
gcacttgatcttttcaaattctatgtggaagacttgaaagcacgttaccatgatgagaag
aagataataaaagatatcttaaaggataaaggatttgtggttgaagtgaacacttctttt
gaagattttgttacggtcatcagctccactaaaagagctactactttggatgcaggaaat
atcaagctggctttcaacagtctgctggaaaaggcagaagcccgtgagagagagagggaa
aaagaagaagctcgcaaaatgaagcggaaagaatctgccttcaagagtatgttgaagcaa
gctactcctccgattgagctggacgctgtctgggaagatatcagagatcgatttgtgaag
gaaccagcatttgaagacatcacactggagtctgagagaaaacgaatatttaaagatttc
atgcatgtactagagcacgagtgtcagcatcatcactcaaagaataagaaacactcgaaa
aagtctaaaaaacatcaccggaagcggtctcggtctcgttcgggctcggagtccgaggat
gacgacagccactccaagaagaaaaggcagcgttcagaatctcgatcggcttccgagcgt
tcttccagtgcagaatccgagagaagttacaagaagtcaaaaaaacacaagaagaagagc
aagaagagaagacataagtctgactcgccagaatcagatattgaacgagaaaaagacaaa
aaagaccgagagagcgaaaaggatagggctaggcaaagatctgaatccaaacataaatct
cctactaaaaaacgacctggaaaagactct
DBGET
integrated database retrieval system
