Apaloderma vittatum (bar-tailed trogon): 104279708
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Entry
104279708 CDS
T08559
Symbol
BARD1
Name
(RefSeq) LOW QUALITY PROTEIN: BRCA1-associated RING domain protein 1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104279708 (BARD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avit03019
]
104279708 (BARD1)
04121 Ubiquitin system [BR:
avit04121
]
104279708 (BARD1)
03036 Chromosome and associated proteins [BR:
avit03036
]
104279708 (BARD1)
03400 DNA repair and recombination proteins [BR:
avit03400
]
104279708 (BARD1)
Messenger RNA biogenesis [BR:
avit03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
104279708 (BARD1)
Ubiquitin system [BR:
avit04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
104279708 (BARD1)
Chromosome and associated proteins [BR:
avit03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
104279708 (BARD1)
DNA repair and recombination proteins [BR:
avit03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
104279708 (BARD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ank
Ank_4
Ank_2
Ank_5
Ank_3
zf-RING_6
BRCT
BRCT_2
Ank_KRIT1
PTCB-BRCT
ANK_LRRK2
NIBRIN_BRCT_II
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
104279708
NCBI-ProteinID:
XP_009875385
LinkDB
All DBs
Position
Unknown
AA seq
721 aa
AA seq
DB search
MVRSCVGDCVGKECPVCHVPAWVKDAQINRQLDNMIQLCSKLRHLLGVDTSDSTEDVSTP
ADSDFGKKSKKEQIKMWFSPRSRKIRCVLNKERQPEPESNSLCQDTSSVYDFFPSPPHEK
PPNPTKKPARTQSRKMKRKRLADINKVWNLEKPEQKGGVEEKTPKEKSVTICSEPVVIWT
QEPNSXLXQESVKEADSSENTENVEIRPQVKCPDKKDNKEVACPAQVSKEKKCGTEASLL
IENEMTPLKRGREQSRLPVTSQAKRPRVAERSSIGKSERQADGLEELPQGCPISPAAEHK
TPVQISSSVSKVTNTVMETRSSAAFQAINSPSLSKSPFTPSKSKTWNGVGIPQSPSVSKS
PGGNTIARRNYKGETLLHVASIKGDLAAVEQLLKNGADPNVKDNAGWTPLHEACNHGHKE
VVELLLQYKALVNTTGYQNDSPLHDAARNGHVSIAELLLLHGASRDAVNIFGLRPVDYAE
SEKMKSVLTLPVKNEFSLNQPSEALSPSQPRDGPLGILGSNLSLEQQKSLNKLTSVLKAQ
RCTEFNSRVTHLVVPGLPMPSTSKCMMAVLTGCWVLRFEWVQACLQTAVREQEEKYEIQG
GPQRGRLNREQLLPKLFDGCYFYFLGSFKHHQKSDLVELVKAAGGQILVRQPKPDSDVTQ
TINTVAYHAQSTSDQRFCTQYVIYDVSSKFKPEKIRQGKVWMAPSSWLIDCVMSFQLLPV
K
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggtaagatcttgtgtgggtgactgtgttggcaaagaatgcccagtgtgccatgtgcca
gcctgggttaaagatgcacagataaaccggcagctggataacatgattcagctttgcagc
aaactgcggcatctgctgggtgtggacacctcagattccaccgaagatgtgtccacacca
gctgactcagattttggaaaaaagagtaaaaaggaacagataaaaatgtggttcagccct
agaagtagaaagatccggtgtgtcctgaacaaggagagacagcctgagcctgaaagcaat
agcctttgtcaagacacatcttcagtttatgatttcttcccttcccctcctcatgaaaag
ccccccaacccaacaaaaaagccagcacgaacacagagcaggaagatgaagaggaaacgt
ctagcagacattaacaaagtgtggaacttagagaagcctgagcagaaaggaggggttgag
gagaagactcccaaggaaaagtctgtgaccatctgcagtgaaccagtggtcatctggact
caggaaccaaatagcnntctgtagcaggagtctgtaaaggaagctgactccagtgaaaat
acagaaaatgtggaaatacggccacaggtgaaatgcccagacaagaaggataacaaggag
gttgcatgccctgcacaagtcagtaaggaaaaaaaatgtggtacagaggcatcactattg
atagaaaatgaaatgacgcctttaaaacgtggaagggagcagtccagacttccagttacc
tcacaggctaaaagaccaagagtagctgagaggagcagtattgggaagtcagagaggcag
gcagatggcttagaggagctgcctcagggttgcccaatttccccagcagccgaacacaag
acaccagttcagatttcttcctctgtatcgaaagtcactaacactgtcatggagacaaga
agctctgcagcctttcaagcaataaacagtccttcactttcaaaatctcccttcactcca
tccaagtctaagacttggaatggagtaggaatcccgcagagtccttctgtgtcgaagtcc
cctggtggtaacacgattgccagaagaaattacaaaggagagactttgctccatgttgct
tccatcaagggtgacttagcagctgttgaacagctgctgaaaaatggggcagatcccaat
gtcaaagataatgctggctggacaccgctgcacgaggcgtgtaatcatgggcacaaagaa
gtggtggagctgttgctacaatacaaggcgttggtgaatactacgggctatcagaacgac
tcgccgcttcatgatgctgccaggaacgggcatgtgagcattgctgagctcctgcttttg
catggtgcctctcgtgatgcggttaatatatttggtctgcggcctgtggactatgcggaa
agtgaaaagatgaagtctgtgctaacgctaccagtgaagaacgaattttcacttaaccaa
ccctctgaggcactgagccccagccagccgagagatggacctcttggtatactggggagc
aatcttagtttggagcaacagaaatcgctgaacaaactaacatcagttctgaaggcccaa
agatgtactgaatttaacagcagagtaactcatcttgttgtccctggtcttccgatgcca
agtacttccaaatgtatgatggctgttctgactggatgttgggtcctcagatttgaatgg
gtacaagcctgtctacaaactgcagtacgagaacaagaagagaagtatgaaattcaaggt
ggcccgcaaagaggccggctcaacagagaacagctgctgcctaagttgtttgatggatgc
tacttctattttctgggatccttcaaacatcaccagaagagtgatcttgtggagttggtc
aaagcagcaggaggacaaattctcgttaggcagccaaaaccagacagtgatgtgacgcag
acgatcaacacggtggcgtaccatgcacagtcgacttccgaccagagattttgcactcaa
tatgtaatctatgatgtgtcttctaaattcaagccagagaaaattcgtcagggcaaagtc
tggatggccccctctagctggctcatagactgcgtgatgtcgtttcagctcctgcctgta
aaatga
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