Apaloderma vittatum (bar-tailed trogon): 104279803
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Entry
104279803 CDS
T08559
Symbol
PCDH18
Name
(RefSeq) protocadherin-18 isoform X1
KO
K16499
protocadherin delta 2
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
avit04515
]
104279803 (PCDH18)
Cell adhesion molecules [BR:
avit04515
]
Cadherins
Protocadherins
104279803 (PCDH18)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_3
Syndecan
PepSY
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
104279803
NCBI-ProteinID:
XP_009875522
LinkDB
All DBs
Position
Unknown
AA seq
1148 aa
AA seq
DB search
MNCKNLQMRRIGGKMHFIFIFALVIISFNKAVLGKNLKYRIYEEQRVGLVIARLSEDVAD
VLSKMPNPSSVRFRAMQRGNSPLLVVREDNGEISIGAKIDREQLCQKNLNCSIEFDVITL
PTEHLQLFHVEVEVLDINDNSPQFSRALIPIEISESAAVGTRIPLDSAFDPDVGDNSLHT
YSLSANDFFSIEVRTRTDGAKYAELIVVRELDRELKSSYELQLTASDKGVPRRSGSSLLK
ISISDSNDNSPVFEQQSYIIQLLENSPVGTLLIDLNATDPDEGANGKVVYSFSSHVSAKI
TETFRIDSEKGHLTLLKQVDYEVIKSYEIDAQAQDLGPNSIPAHCKIIIKVVDVNDNRPE
INLNLMSPEKEEVAYISEGSPLDTFVALVRVQDKDSGVNGEVVCKLHGHGHFKLQKTYEN
NYLILTNATLDREKRSEYSLTVIAEDKGTPSLSTVKHFTVQISDENDNPPRFQTNRYEVV
ILENNSPGAYITSVTATDPDLGDNGQVTYTILESSISGSSITTYVTIDPSNGAIYALRTF
DHEEVNQISFMVQARDGGSQQLVSNTTVVLTIIDENDNAPVIVGPALRNSTAEISIPKDA
GIGFLVTRIRATDRDSGMNSELSCSIAADKESSIFVMDPKTCDISINVSVESVPAKQWEF
FVIVQDKGSPQLSTKALLKCTVFEYVYSFSSTEATLVSQPSLDVSMITIISLGSICAVLL
VIMVIFATRCNREKKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTVNGTLPIRSH
HRASPSSSPTLERGQMSSRQSHHSHQSLNSLVTISSNHVPENFSLELTHATPAVEQVSQL
LSMLHQGQYQPRPSFRGNKYSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRESPID
RLLGEGFSDLFLTDGRIPAAMRLCTEECRVLGHSDQCWMPPLPSPSSDYRSNMFIPGEEF
QSPQQQHQQQHQQHQHQQPGLEEEAQPADTGEKKKSFSTFGKDCQSEEESGDTCTSSLLS
EMSSVFQRLLPPSFDAYTECNEMDRSNSLERRKGHLPAKTVNYPQGVAAWAASTHFQNPA
SNGLALGTHSSAQPSSKWLPAMEEIPENYEEDDFDNVLNHLSDGKHELMDASELVAEINK
LLQDVRQN
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgaattgcaaaaacttacaaatgcggcgaatcggcggtaaaatgcactttatattcatt
tttgcactggtgataatatctttcaataaggctgtgctgggcaagaatttgaaatacagg
atttatgaggagcagagagtcggattggtaatcgcaagactgtcggaggatgtagctgat
gttttatcaaaaatgcccaacccttcctcagttcgctttcgagccatgcagagggggaat
tctcccttgcttgtggtccgggaggataatggagaaatcagcataggagctaaaattgac
cgggaacaactctgccagaaaaacttaaactgctccatagagtttgatgtgatcactctg
cccactgaacatctgcagcttttccatgtcgaagttgaagtgctggacattaatgacaac
tctccccagttttccagagctcttatccctattgaaatatcagagagtgcagctgtagga
acccggatccccttggacagtgcttttgatcctgatgtaggggacaactcccttcacact
tactccctttctgcaaatgatttttttagtattgaggtgagaaccaggactgacggtgct
aagtatgcggagctgatcgtggttagggagctggacagggagttgaagtcgagttacgaa
ctccagctcactgcttcagataaaggggtgcctcggagatccggatcatccctcctgaaa
ataagcatttctgattccaatgacaatagccctgttttcgagcaacagtcctacataatc
cagctcttagaaaattcgcctgttgggactttgctcatagacctcaatgctaccgaccca
gatgagggcgctaacggtaaagtcgtgtactcttttagtagtcatgtgtctgccaaaatt
acagagacttttaggatagattcagaaaaaggacatctgaccctcctgaagcaggtggac
tacgaagtgataaagtcctatgaaatcgatgctcaggctcaagatctggggccaaattct
attccagctcactgcaaaattataattaaagttgtggatgtgaatgacaacagacctgaa
attaacctaaacctgatgtccccagagaaagaagaggtagcttacatttccgaagggtcc
cctctggacacttttgttgccctggtcagagtgcaggacaaggactctggtgtgaatgga
gaggtggtttgcaagctccatgggcatggccactttaaacttcaaaagacttacgaaaat
aactatttaatcttgactaacgccaccctagatagggagaagagatctgaatacagcttg
actgtaatagcggaggacaagggaacgccaagtctctccacagtgaaacactttactgtc
caaatcagtgatgaaaatgacaacccaccccgcttccagacaaacagatacgaagttgtt
atcttggaaaataactccccgggagcgtacatcacatcagtcacagccacagacccagat
ctaggagacaacgggcaggtgacctacaccattttggagagctctatttcgggcagttct
ataaccacctacgtgaccatcgatccttctaacggggcgatctatgccctgagaaccttt
gaccatgaagaagtaaatcaaatctcctttatggttcaagctagggatggagggagccag
cagctcgttagcaataccacggttgtactgaccatcattgacgaaaatgacaacgctcct
gtcatcgtggggccagcgctacgcaacagcacggcagagatctcaatccctaaagatgct
ggaattggctttctcgtcaccaggataagggctacagacagagattctggcatgaactcc
gaactcagctgctccatagcggctgacaaggaaagcagcatttttgtgatggatcccaaa
acctgtgacatctccatcaacgtgagtgttgaatcagttccggcaaaacaatgggaattt
tttgtgatagtccaggataaaggcagtcctcagcttagtactaaagcgcttctgaaatgt
actgtctttgagtatgtttattcattttcaagcacagaagcaactttggtaagccaaccc
tccctggatgtctccatgataaccattatatccttaggatcaatatgtgctgtgctgttg
gtcattatggttatctttgctacaagatgtaatcgagagaagaaggacacccggtcctac
aactgccgcgtggcagaatcgacctaccagcaccacccaaaaagaccctcaagacagatc
cacaaaggggacattacgttggtgccaacagtcaacggcactttacccatcagatctcac
cacagagcttccccatcatcatctccgaccctggaaaggggacaaatgagcagccggcag
agccaccacagccaccaatcactgaacagcctggtgaccatctcctctaaccacgtgcct
gaaaatttctcgctggagctcacccatgctactccagctgttgagcaggtttctcagctt
ctctcgatgcttcaccagggccagtatcaaccaaggccaagctttcgaggaaacaagtat
tccagaagctacagatatgccctacaagatatggataaattcagcctgaaggacagtggt
cggggtgatagtgaagctggagacagtgattacgatttggggagagagtctccaattgac
agacttctcggagaaggattcagtgaccttttccttacagatgggagaattcctgcagcg
atgcggctgtgcacagaggagtgcagggttctggggcactccgaccagtgctggatgcca
ccgttgccctctccttcctccgattacagaagtaacatgttcatccctggggaggagttc
cagtcgccccagcagcagcaccagcagcagcaccagcaacaccagcaccagcagccaggc
ctcgaggaagaagcacagcccgctgacaccggcgagaagaagaagagcttttccacgttc
ggtaaagactgccagagcgaggaagagtctggggacacctgtacctcctccctcctctct
gaaatgagcagcgtcttccaacgcctgctgccaccctccttcgacgcctacacggagtgc
aatgagatggatcgttccaactcgctggagcgcaggaagggacatttgccagccaagact
gtaaattatcctcagggggtggccgcctgggcagccagcacgcacttccaaaatcctgcc
agcaacgggctcgctctggggactcactcgagcgcgcagccatcctccaagtggctgcca
gccatggaggagatcccggagaattacgaagaagatgattttgacaatgtgctcaaccac
ctcagtgatggtaaacacgaactcatggatgccagcgagctggtggctgaaattaacaag
ctgctgcaagatgtccggcagaactag
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