Apaloderma vittatum (bar-tailed trogon): 104280217
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Entry
104280217 CDS
T08559
Symbol
THOC2
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Pathway
avit03013
Nucleocytoplasmic transport
avit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104280217 (THOC2)
09122 Translation
03013 Nucleocytoplasmic transport
104280217 (THOC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avit03019
]
104280217 (THOC2)
03041 Spliceosome [BR:
avit03041
]
104280217 (THOC2)
Messenger RNA biogenesis [BR:
avit03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
104280217 (THOC2)
Spliceosome [BR:
avit03041
]
Complex C
Other components
EJC/TREX
104280217 (THOC2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
104280217 (THOC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
104280217
NCBI-ProteinID:
XP_009876095
LinkDB
All DBs
Position
Unknown
AA seq
1571 aa
AA seq
DB search
VQVCRALCENKNHDNTGFRDIQQALYELAYHVVRGNLKHDQASNVLSDVIEFREDMPSIL
ADVFCILDIETSCLEEKSKRDHFTQLVLACLFLVSDTILKERLDPETLESLGLIKQSQQF
NQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGNITSDLILENIKSLIGCFN
LDPNRVLDIILEVYECRPEYDDFFVPLIESYMYMCEPQTLCHILGFKFKFYQDPSGETPS
SLYRVAAVLLQHNLIDLEDLYVHLLPGDNTIIEEHKREIVEAKQIVRKLTLVVLSSEKTE
EKEKEKEKEEEKSEKPPDNQKLGLLEALLKIGDWQHAQSIMDQMPPFYATSHKSIAIALC
QLVHVTIEPLYRRVGLPKGAKGTPFASLPNKRAPKQAESFEDLRKDVFSMLCYLGPHVSH
DPILFVKVVRLGKAFIKEFQSDGSREEKEKMEVLFSCLLSITDQVLLPSLSLMDCNACMS
EELWSLFKPFPYQYRYRLYGQWKNETYNSHPLLVKVKAQTIDRAKYIMKRLTKENVKPSG
RQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYLTSLSYDVLAYCIIEALANPEK
ERMKHDDTTISSWLQSLASFCGAVFRKYPIDLAGLLQYVTNQLKAGKSFDLLILKEVVQK
MAGIEITEEMTREQLEAMTGGEQLKAEGGYFGQIRNTKKSSQRLKEVLLDHDLALPLCLL
MAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQFGRFLASNLSTEDYIKRVPSIDVLCN
EFHTPHDAAFFLSRPMYAHLISSKYDELKKAEKGNKQQHKVHKYITSCELVMGPVHDAVI
SLHLPKVWDDISPQFYATFWSLTMYDLAVPHSSYDREVNKLKVQMKAIDDNQEMPPNKKK
KEKERCTALQDKLIEEEKKQLEHVQRVLQRLKLEKDNWLLAKSTKNETITKFLQLCIFPR
CIFSAIDAVYCAHFVELVHQQKTPNFSTLLCYDRVFSDIIYTVASCTENEASRYGRFLCC
MLETVTRWHSDRGIYEKECGNYPGFLTILRATGFDGGNKADQLDYENFRHVVHKWHYKLT
KASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLGQALERRVHKICQEEKEKRPDLYAL
AMGYSGQLKSRKPFMIPENEFHHKDPXFAIAATVQNGPGGAGMPLSLTVNTVRLEEGTAE
ETEKLKEKSQGVVKVINKAVNTAPKVTTSNGNSASNSKIIKEKDDKEKSGKEKEKEKKDK
TPAAAPEVKALGKDGKDKPKEERANKDDKAREIKEKPPKSDKEKEKVKKEEKASKEEKSK
TVVTIVESKSTIEKEREKEPSRERDVAKEMKSKENAKGGEKVPVAGSLKSPVPRSETSES
EREQKRRKVDTHSSPSHSSTVKDNLNELKDSSAKHYINHTTPALSKSKEREVVDKKDLDK
SRERSREREKKDEKDRKDRKRDHSNSDREVPQDSTKRRKEENGTTGSSKHSKSESPSDSP
RLNEKEKEKNKSKSSGKDKGDSIKAEKMEKSSSGSKKESRHDKEKTEKKEKRDSTGGKEE
KKHHKSSDKHR
NT seq
4717 nt
NT seq
+upstream
nt +downstream
nt
tgtgcaagtgtgtcgcgctctctgtgaaaacaaaaaccatgataatactggtttcagaga
tatacagcaggctctgtatgagcttgcataccatgttgtcagaggaaacttaaagcatga
tcaagcttctaatgttcttagtgatgtcatagaatttcgggaagacatgccttccatcct
agctgatgtattctgcatattggatatcgaaacaagttgtttagaagaaaaaagtaagag
ggatcattttacccagctggtattggcctgtttgtttcttgtatctgacacgatcctaaa
ggagcgcttagacccagagacactggagtcgttaggacttatcaagcagtctcaacagtt
caatcagaaatctgttaaaataaagacaaaactattttataagcaacagaagtttaattt
gttaagagaggagaatgaaggttatgcgaaactcattgctgaactggggcaagacttgtc
tggaaacatcactagtgatttaatccttgaaaatatcaaatcgttaataggatgttttaa
cctggatcctaacagagttctggatattatcctagaagtctatgagtgcagacctgagta
tgatgacttctttgtaccgctgatagagtcttacatgtacatgtgtgaacctcaaacttt
atgccatatccttgggttcaaattcaaattttatcaggatccaagtggtgagacgccatc
ctccttatacagagttgctgctgtccttttgcaacataatctcatagatttggaagacct
ttatgttcatcttcttccaggggataataccatcatcgaggaacacaagcgagagatagt
ggaagctaaacaaattgtcagaaaacttacacttgttgttttatcctctgaaaagactga
ggaaaaagagaaggaaaaggaaaaagaggaggagaaatctgaaaagccccctgataacca
aaagcttggtttattagaagcgttattaaaaattggtgactggcagcatgcacaaagtat
tatggatcagatgcctccgttttatgctacttcgcacaagtctattgcaattgccctttg
ccagcttgtacacgtgacaattgaacctctgtaccgaagagttggtctaccaaagggagc
taaagggacaccatttgcttctttaccaaacaagagagcaccaaaacaagcagagagctt
tgaggacttgaggaaagacgtgttcagcatgctttgttatcttggtcctcatgtctccca
tgatcccattttatttgtaaaagtggtgcgtcttggaaaagcgtttattaaagagtttca
gtctgatggaagcagagaagaaaaagagaaaatggaggttctgtttagctgcttgctgag
tattaccgaccaggtcttgcttccatctctttctctgatggactgcaatgcatgcatgtc
tgaagaattatggtcactgttcaaaccttttccataccagtaccggtaccgtctttatgg
gcaatggaagaatgaaacatacaatagtcacccgcttctagtgaaagttaaagctcaaac
catagaccgagccaaatacattatgaaacgtttaactaaggaaaatgtgaaaccctctgg
aagacaaattgggaagctcagccacagcaatcctacgattttatttgattatattttatc
acaaatacaaaaatatgataacttaataactccggttgttgactccctgaaatacctcac
ttcgctgagctatgatgtcttggcatactgtatcattgaagctctggcaaaccctgagaa
ggagagaatgaagcatgatgacactacaatctcgagctggctgcagagtctggctagctt
ttgtggtgcagttttccgaaaatacccgattgatcttgctggtctgcttcaatatgtaac
caaccaactgaaagctgggaaaagctttgatttgcttattttaaaagaggtagtgcagaa
aatggcagggatcgaaattacagaagaaatgaccagggaacagttggaagccatgactgg
tggagaacaactgaaagctgagggtggatactttggccaaatcaggaatacaaaaaaatc
ttctcagagattgaaggaagtattactggaccatgatcttgctctcccactgtgcctgct
tatggctcagcagagaaatggtgtgatctttcaagagggaggagaaaaacacctgaagct
agtgggaaaactgtatgatcagtgccatgacaccctggtgcagtttggtaggtttttagc
atccaatctgagcacagaggattacattaagcgagtgccttctattgacgttctctgtaa
cgagtttcacacgcctcacgatgctgcatttttcctctcgagacccatgtatgcacacct
tatatcatcaaagtatgatgaactgaaaaaagctgagaagggaaataaacagcagcacaa
agttcacaaatacattacgtcgtgtgagctggtgatgggtcctgttcacgatgctgtgat
ttctctgcaccttcccaaggtgtgggatgacatcagtcctcagttttatgctacattctg
gtctttgacaatgtatgaccttgccgtcccacatagcagctatgacagagaagtcaataa
actcaaagtccagatgaaagccatagatgacaatcaggaaatgcctccaaataaaaagaa
aaaggagaaagaacgttgcacagctcttcaggacaagctcatcgaagaggagaagaagca
gttggagcatgtgcagagggttctacagagactgaaactagagaaggataactggcttct
ggcaaagtctaccaaaaatgagactatcacaaaattcttgcagttatgtatatttcctcg
gtgcattttttcggcaatcgatgcggtttattgtgctcactttgtagaactggtgcatca
gcagaaaacacccaacttctccacacttctctgctatgacagagttttctctgacataat
atatacagttgcgagttgcactgaaaacgaagctagtagatacggcagatttttatgctg
tatgctggagactgtgactagatggcacagtgatagaggcatatatgaaaaggaatgtgg
caactatccaggcttcctaactatattacgggcaactggatttgatggtggaaataaagc
cgatcaattggattatgagaattttagacatgtggtacacaagtggcactataaattaac
taaggcttctgtgcactgccttgaaacaggtgaatatacacatatcagaaatatcctgat
tgtgctgaccaaaatccttccgtggtatccaaaagtgctgaacctgggccaagccttgga
aagaagagtccataagatatgtcaggaagagaaagagaagagacctgatctatatgcatt
ggctatgggctattctgggcagttgaaaagtaggaagcctttcatgatacctgaaaatga
attccaccacaaagacccancttttgccatagctgcaacagtacagaatgggccaggtgg
tgctgggatgcccctgtctctcacagtcaatacagttagactggaagaaggcactgctga
ggagactgaaaaactaaaggagaagtctcaaggtgtggtgaaagtaattaataaagctgt
caacactgcaccgaaggtgacaacaagcaatggaaacagtgcttctaatagcaaaattat
taaagagaaagatgataaagaaaaaagtgggaaggaaaaagagaaagaaaagaaagacaa
gactccagctgccgctccagaggtgaaggcacttgggaaggatgggaaagataaaccaaa
ggaagaacgggcaaacaaagatgataaagcaagagagatcaaggagaaaccgccaaaatc
tgacaaagagaaggaaaaagtcaagaaggaagaaaaagcttcaaaagaagaaaaatccaa
gacagttgttaccatcgttgagtcaaagtcaaccatagaaaaggagagagaaaaggagcc
gtccagagaaagagatgtagcaaaggaaatgaaatccaaggaaaatgctaaaggaggaga
aaaggtgccagtagctgggtccttgaagtcccctgttccccgatcagagacatcagaatc
tgaaagggaacaaaaacgccgcaaagttgatacacattcttctccatcacattcctcaac
agtaaaggacaacctcaacgaactcaaggactcttcagcaaagcactacattaaccacac
tactccagcactgtccaagagtaaggagagagaagtggtggacaagaaagatttggacaa
gtcaagggaaagatccagagagagagagaagaaagatgaaaaggacaggaaggatcgaaa
aagggatcattcaaacagtgaccgagaggtaccacaggattcaaccaaacgacgcaaaga
ggaaaatgggacaactgggtcttcaaaacatagtaaaagtgaaagtccttctgattcccc
tcgcttaaatgaaaaggagaaggagaagaacaaatcaaaatcatcaggaaaagacaaagg
tgattcaattaaagcagaaaagatggagaagagctcctctggtagcaaaaaggaatcaag
acatgacaaggaaaaaacagaaaagaaagaaaaacgagacagcactggagggaaagaaga
aaagaaacatcataagtcttcagacaagcacagataa
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integrated database retrieval system
