Apaloderma vittatum (bar-tailed trogon): 104281012
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Entry
104281012 CDS
T08559
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
avit04121
]
104281012 (PDZRN3)
Enzymes [BR:
avit01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104281012 (PDZRN3)
Ubiquitin system [BR:
avit04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
104281012 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
Tricorn_PDZ
Motif
Other DBs
NCBI-GeneID:
104281012
NCBI-ProteinID:
XP_009877162
LinkDB
All DBs
Position
Unknown
AA seq
757 aa
AA seq
DB search
VNGKDLSRATHEQAVEAFKTAKEPIVVQVLRRAPRTKAFAPPHDSQLVDVGTQTDITFEH
IMALSKMGSPTPPVSVLDPYLLPEDHPSVHEYYDPNDYMGGIHQEMDRDELELEEVDLHR
VNSQDKLGLTVCYRTDDEDDMGIYVSEIDPNSIAAKDGRLREGDRIIQINGIEVQNREEA
VALLTSEESKNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASMLQ
QKKHEEDGGTTDTATILSNQHEKDSGVGRTDDSTRNDESSEQENNADDHTTASNTLGSQK
KLTYSHDTLGSGDMQFSNESFISADCTDVDFLGIPVDECERFRELLELKCQVKSANPYGL
YYHNSMLDMSKSDQESVDRELEMLNEELRNIELECLNIVRAHKMQQLKDQYREPWMLHNS
GFRNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSLRRTAE
GINCQGNEGAVAYSVSQKNLFASSESHEASTGKCHAAAKDPDPSKQLESKERKASDGSKS
PTHGQKPSGSYVSPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCKD
LNSSQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIKEERSGMTTDDDAISEMKM
GRYWSKEERKQHLVKAKEQRRRREFMMQSRLDCLKEQQGAEEKKEMSIIELSHKKMMKKR
NKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
gtcaatgggaaggatttatctagagcgacacacgagcaggcggtggaagcgttcaaaacg
gccaaggagcccatcgtggtgcaggtgctgaggagagccccgcgcaccaaggccttcgct
cctcctcacgactcccagctggtagacgtgggcacacagaccgacatcactttcgaacac
atcatggctctgagcaagatgggctcacccactccacccgtctctgtgctagacccatac
ctcctacctgaagaccatccatcagtgcatgaatactatgacccaaatgactacatggga
ggaattcatcaagaaatggaccgagatgagttggaattagaggaagtagatttacataga
gtgaacagccaggacaagcttggccttactgtatgttacagaacagatgatgaagatgac
atgggtatttatgtgagtgagattgaccccaacagtattgctgcaaaagacggtcggctc
cgagaaggggatcgcattattcagatcaatggcatagaagtacagaaccgggaagaagcc
gtagcacttctcaccagtgaagagagcaagaatatctccttacttgttgcaagaccagaa
attcagctggatgaaggatggatggatgatgacagaaatgattttctggatgacttgcac
atggacatgttagaggaacagcaccaccaggcaatgcaatttactgccagcatgcttcag
cagaagaagcacgaggaggatggaggaaccacagacacagccactattttatctaaccag
cacgagaaggacagcggcgtggggcgcacagacgacagcactcgcaacgatgagagctcc
gagcaggagaacaacgcggatgatcacaccactgcctccaacactttagggagccagaag
aagctgacgtacagccacgacaccctcggaagcggcgatatgcagttcagcaacgagtcg
tttatctcagccgactgcacagacgtcgacttccttggcatccccgtagacgaatgcgag
cgattccgggagctgctggagctgaagtgccaggtgaagtctgccaacccttacggtctg
tattatcataacagcatgctggatatgagcaaaagcgaccaagaaagcgttgacagagag
ttggagatgctgaacgaggagctgcgcaacattgagctggagtgcctgaatattgtgaga
gctcataaaatgcagcagctgaaagatcagtaccgggagccctggatgctacataacagc
gggttccgcaactataacacgagcattgacgttcgcaggcacgagctctcagacattacg
gagctcccggagaagtctgacaaggatagctcgagcgcgtataacaccggcgaaagctgc
cggagcacaccgctcacgctggagatctcccctgacaattcgctgcgcagaactgcagaa
ggcattaactgtcaaggtaacgagggggcagtggcatacagcgtctcccaaaagaattta
tttgctagctcagaaagtcatgaagccagcactggcaaatgccatgccgctgctaaagac
cccgaccccagcaagcagctggaaagcaaggagagaaaagccagtgatggaagcaaaagc
cccactcatggtcagaaaccttctggctcctacgtctccccgtaccatcactctccgtac
aagcacgctcacatccctgcccacgcccaacactatcagagctacatgcagctgatccag
cagaagtcagcggtggagtacgcccagagccaaatgagcctggtgagtatgtgcaaagac
ttgaactcgagccagagcgaaccgaggatggagtggaaagtcaaggtcaggagcgacggg
acccgctacattacaaagaggccggtcagggacaggctgctgagggagcgcgccataaag
atcaaggaggagcgcagcgggatgaccaccgacgatgatgccataagtgaaatgaagatg
ggtcgttactggagcaaggaggaacggaagcagcatttagtgaaagcgaaggagcagagg
cggcggcgtgagttcatgatgcagagcaggttagactgcttaaaggaacagcaaggtgcg
gaagaaaagaaagagatgagtatcattgaactgagccacaaaaaaatgatgaagaagaga
aataaaaaaatatttgacaattggatgacaatccaagaactcctaacccacggaacaaag
tcaccggacggcacacgggtgtacaattccttcctgtcagtgactactgtataa
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integrated database retrieval system
