Apaloderma vittatum (bar-tailed trogon): 104281403
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Entry
104281403 CDS
T08559
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
avit
Apaloderma vittatum (bar-tailed trogon)
Brite
KEGG Orthology (KO) [BR:
avit00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avit03021
]
104281403 (CHD1)
03036 Chromosome and associated proteins [BR:
avit03036
]
104281403 (CHD1)
Transcription machinery [BR:
avit03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
104281403 (CHD1)
Chromosome and associated proteins [BR:
avit03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
104281403 (CHD1)
SLIK complex
104281403 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
ResIII
HDA2-3
DEAD
CHDCT2
DUF7855_C
Motif
Other DBs
NCBI-GeneID:
104281403
NCBI-ProteinID:
XP_009877687
LinkDB
All DBs
Position
Unknown
AA seq
1703 aa
AA seq
DB search
RSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGTQSESESDTSREKKQIEAK
LPKVDGSEFWKSSPSILAVQRSAVLKKQQQQQKVTSSDSGSEEESSSSEDSADDSSSETK
KKNHKDEDWQMSGSGSVSATGSDSESEEDREKSSCEESESDYEPKNKVKSRKPPSRIKTK
SGKKSAGQKKRQLDSSEEEEEDDDDDYDKRGSRRQATVNISYKEAEETKTDSDDLLEVCG
EDVPQTEEDEFETIEKFMDSRVGRKGATGAATTIYAVEADGDPNAGFEKSKEPGEIQYLI
KWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQEL
TDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALIAKKFQARIDEY
FSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLELRDYQLNGLNWLAHSWCKGN
SCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVV
YLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSFLGGLNWAFIGVDEAHRLK
NDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGRE
YGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTRNYKALSKG
SKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHLIRSSGKLILLDKLLIRL
RERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCF
LLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEE
DILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKEELSAILKFGAEELFKEP
EGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVANFSNMDEDDIELEPERNS
RNWEEIIPEVQRRRIEEEERQKELEEIYMLPRMRNCAKQVSFNGSEGRRSRSRRYSGSDS
DSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGPLERLDAVARDAELVDK
SETDLRRLGELVHNGCIKALKDNSSGPERAGGRLGKVKGPTFRISGVQVNAKLVISHEEE
LAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP
DLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEAQRLAGAGNLKRKKTRTKK
NKVIKAAKIKEEIKSDSSSQESERSDEDDDEDNKVSEIKSESKEKMKKIPLLDTPVHITA
TSEPVPISEESEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIG
DHITECLKEYTNPEQIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQHNDQNI
SSSVNTHVIRNPDVERLKENTNHDDSSRDGYSSDRHLSQYHDHHKDRHQGDAYKKSDSRK
RPYSAFSNGKDHRDWDHYKQDSRYYSDSKHRKLDDYRSRDHRSNLEGSLKDSRSHSDHRS
HSDHRIHSDHRSTSEYSHHKSSRDYRYHSDWQMDHRASGSGPRSPLDQRSPYGSRSPLGH
RSPFEHSSDHKSTPEHTWSSRKT
NT seq
5113 nt
NT seq
+upstream
nt +downstream
nt
ccgatctgatgatgattccgggtcagcatcaggttctggatctggttcaagctctggaag
cagtagtgatggaagcagcagtcagtcaggcagcagtgactctgactctggttcagagtc
aggcactcagtcagaatcggagtctgacacctctagagagaagaaacaaattgaagctaa
actgcccaaagttgatggatctgagttttggaagtctagtccaagtatacttgctgtgca
aagatcagcagtgctcaagaaacagcagcaacaacaaaaggtcacttcatcagacagtgg
ttcagaagaggaatcatcaagtagtgaagattctgcagatgactcatccagtgaaaccaa
gaagaaaaaccataaagatgaagactggcaaatgtcgggatcagggtcagtatcggcaac
tggttccgattctgaatcagaggaagatagggagaagagcagttgtgaagagagtgagtc
tgactatgaacccaaaaacaaggtcaaaagccggaaacctccaagcagaattaagaccaa
aagtgggaaaaagagtgcaggacagaaaaagaggcaacttgattcatcagaggaggagga
agaggatgatgatgatgattatgataagagaggatctcgtcgccaggcaacggtcaatat
tagttacaaagaagccgaagaaaccaagacagattctgatgatttgctggaagtttgtgg
agaagatgtcccacaaactgaagaagatgaatttgaaactatagagaagttcatggatag
tcgagttggccgaaaaggagccactggtgctgcaaccaccatctatgcagttgaggcaga
tggtgacccaaatgctggatttgagaagtcaaaggagcctggagaaatacagtatcttat
taaatggaaaggctggtcgcacatccataacacttgggaaactgaggaaacactgaagca
acaaaatgttaaagggatgaagaaactggacaactataagaaaaaagatcaagaaacaaa
acgatggctgaaaaatgcttctccggaagatgtggaatattataactgccagcaggagct
tacagatgatctacataaacagtatcagatagtggaaagaataattgctcattcaaatca
gaaatcagcagctggttatccagactactattgtaagtggcagggtctgccttattcaga
atgtagctgggaagatggtgcgctcattgccaagaagttccaggcacgtattgatgagta
ctttagcagaaatcagtccaagaccactccctttaaggactgcaaggttctgaaacaaag
gccaaggtttgttgcactgaaaaagcaaccatcttacattggaggacatgaaagtttaga
gttaagagattatcagttaaatggattgaattggcttgctcactcatggtgcaaagggaa
tagctgcattcttgcagatgaaatgggtttgggtaaaacaatacaaacaatttcttttct
gaattacctgtttcacgagcatcaactctacgggcctttcttgctggtcgtgccactctc
taccttgacttcatggcaaagagagattcaaacttgggctcctcagatgaatgctgtagt
ttacttaggagatataactagcagaaatatgataagaacgcatgaatggatgcatccaca
aacaaaacgattaaaatttaacatacttctaacaacatacgaaattctgctgaaggataa
gtcattccttggtggtctgaattgggcgttcataggagttgacgaagctcatcgtttgaa
aaatgatgactctcttctgtacaagactttaatagactttaagtctaaccatcgtcttct
tattactggaacccctctacaaaactccctcaaagagctttggtctttgttgcacttcat
catgccagaaaagttctcctcctgggaagattttgaagaggagcatggtaaagggaggga
gtatggttatgcaagtcttcacaaggagcttgaaccatttctgctgagaagagttaaaaa
agatgtagagaagtctttacctgctaaagttgagcaaattctgaggatggaaatgagtgc
gttgcagaagcaatactacaagtggattttaacaaggaattataaagccctcagtaaagg
ttcaaaaggcagtacctcaggctttttgaacatcatgatggagctcaagaagtgttgtaa
ccattgctacctcattaaaccaccagatgataatgaattctataataaacaggaggcctt
acagcatttaattcgtagcagcgggaaactgatacttcttgacaagctactgattcgtct
gcgagaacgtggcaacagagttctgattttctcacagatggtgaggatgctggacatcct
agcagaatatctaaagtatcgtcagtttccgtttcagagacttgatggatcaataaaagg
ggaattgaggaaacaagcactggatcattttaacgcagaaggatcagaggacttctgctt
tttactgtctaccagagctggaggattaggtatcaacttggcatctgctgacactgtagt
tatatttgattctgactggaatccacagaatgatctgcaagcacaggctagagcacatag
aattggacagaagaaacaggttaatatttatcgactagtcacaaaaggatcagtagaaga
agatattcttgaaagagccaagaagaagatggtgttagatcatttagtgattcagagaat
ggacactacagggaaaactgtactacatacaggctctactccttcaagctcaacaccttt
taataaagaggagttatcagcgattttgaagttcggtgctgaggaactttttaaggaacc
tgaaggggaagagcaggagccccaggaaatggatatagatgaaatcctgaagagggctga
aactcgggaaaatgagccaggtccattaactgtaggagacgagttgctttcacaattcaa
ggtggccaacttttccaatatggacgaagatgatattgagttggaaccagaacgaaattc
aagaaactgggaagaaatcattccggaagtccagcggcgaagaatagaagaggaggaaag
acagaaagaacttgaagaaatatacatgctcccgaggatgagaaactgtgcaaaacaggt
gagttttaatggaagtgaagggaggcgcagtaggagcagaagatactctggatctgatag
tgactccatctcagaaagaaaacggccgaaaaaacgtggaagaccacgaactattcctcg
agaaaatattaaaggatttagtgatgcagagatcaggcggtttatcaagagttacaagaa
atttggtggccctcttgaaaggttagatgctgtagctagagatgctgagctagttgataa
atcagagacagatcttagacgtttgggagagcttgtacataatggatgcattaaagcttt
aaaggacaattcatctggaccagaaagagcaggtgggagacttgggaaagttaaaggccc
aacatttcgaatctcaggagtacaggtgaatgcaaagctagtcatctctcatgaagaaga
gttggcaccattacacaaatccattccttcagatccagaagaaaggaaaagatatgtcat
cccatgccacaccaaggctgctcattttgatatagattggggaaaggaagatgattcgaa
tttgttaataggcatctatgaatatggttatggcagctgggaaatgataaaaatggatcc
tgatctcagtttgacacagaagattttgcctgatgatcccgataagaaaccccaggcaaa
gcagttacagacccgtgcagactacctcattaagttactgaataaagaccttgcaaggaa
ggaagcacagaggcttgctggtgcaggcaatttaaagaggaagaaaacaagaactaagaa
gaataaggtgataaaggctgcaaaaataaaagaagaaataaaaagtgattcatcatcaca
agaatcggaaagatctgatgaagatgatgatgaggataacaaggtaagtgaaatcaaatc
tgaaagtaaagaaaaaatgaaaaaaattccattgttggatactccagttcatattactgc
aactagtgaaccagttcctatatcagaagaatctgaggaactggatcagaaaactttcag
tgtgtgtaaagaaagaatgaggcctgtcaaagcagcactgaaacaactggatcgaccaga
gaagggcctttctgaaagagagcagctggaacatactagacagtgcctaatcaaaattgg
ggatcacattactgaatgtctaaaggagtacacaaatcctgaacaaattaaacagtggag
aaaaaatttgtggatttttgtgtctaagtttacagaatttgatgccagaaagctgcacaa
actgtataaacatgcaatcaaaaaacgccaagagtctcagcaacacaatgatcagaatat
tagcagcagtgtgaatacgcatgtaattagaaacccagatgtggaaagactgaaagagaa
tacaaaccatgatgacagtagcagggatggttactcttctgatagacatctgtcacaata
ccacgatcatcataaagacaggcatcagggagatgcttacaagaaaagtgactctaggaa
aaggccctattcagctttcagcaatggaaaagatcacagagactgggatcactacaaaca
agacagcagatactacagtgatagtaaacataggaagttagatgactacaggagcagaga
ccacagatcaaacctggaaggaagtttaaaagacagccggtctcattccgatcaccgctc
ccattcagaccacaggatacattcagatcaccgttccacttcagagtacagccatcataa
atcttctagagattacaggtaccactcagactggcaaatggaccacagagcttcaggtag
tggcccacggtcaccattagatcagaggtctccttatggttcaagatctcccctaggaca
cagatctccatttgaacattcatctgatcacaaaagtacacctgaacatacatggagtag
ccggaaaacataa
DBGET
integrated database retrieval system
