Alloalcanivorax venustensis: ACMG4O_04500
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Entry
ACMG4O_04500 CDS
T11689
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
avj Alloalcanivorax venustensis
Pathway
avj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACMG4O_04500 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avj03021
]
ACMG4O_04500 (rho)
03019 Messenger RNA biogenesis [BR:
avj03019
]
ACMG4O_04500 (rho)
Transcription machinery [BR:
avj03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACMG4O_04500 (rho)
Messenger RNA biogenesis [BR:
avj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACMG4O_04500 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
AAA
S1CSD-TOTE-2
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
XOC16106
LinkDB
All DBs
Position
complement(939708..940967)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLSELKQKPIGELLDIAKELGLENLARTRKQDVIFSILKRAAKNGSDIYGDGVLEILQD
GFGFLRSAEGSYLAGPDDIYVSPSQIRRFNLRTGDTIAGKIRPPKDGERYFAMLKVSEIN
TDRPENAKTKILFENLTPLFPTERMVMEVGNGSTEDITARVIDLVAPIGKGQRGLIVAPP
KAGKTMLLQGIAQSIARNNPETHMIVLLIDERPEEVTEMSRTVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKQDVVILLDSITRLARAYNTVQPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTILATALVETGSKMDEVIYEEFKGTGNMELHLDRKVAEKRVFPAMNI
KRSGTRREERLVSEDELQKMWILRKVLHPMDEIGAMEFLIDRMKQTKTNAEFFDSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctttccgaactgaaacagaagccgatcggcgaacttctggatattgccaaggaa
ctcggcctggagaacctggcgagaacccgcaaacaggacgttatcttctccatcctcaag
cgagccgccaagaacggctcggacatctacggtgatggggtgctggaaattctgcaggac
ggcttcggcttcctgcgctccgcggaaggctcttacctggccggcccggatgacatttac
gtgtcgcccagccagatacgtcgcttcaacctgcgcaccggcgacaccatcgccggcaag
atccggccccccaaggatggcgaacgctacttcgccatgctcaaggtcagtgagatcaac
accgaccggccggaaaacgccaaaaccaagatcctgttcgagaacctgaccccgctgttc
cccaccgagcggatggtcatggaagtcggcaacggctccaccgaggacatcaccgcccgg
gtgatcgacctggtggcgccgatcggcaaaggccagcgcggcctgatcgtggcgccgccc
aaagccggtaagaccatgcttctccagggtatcgcccagtccatcgcccgcaacaacccc
gaaacgcacatgatcgtgctgctgatcgacgagcggcccgaggaagtgaccgagatgtca
cgcacggtgcgcggggaagtggtggcctccaccttcgacgaaccgccggcccgccacgtg
caggtcgccgagatggtgatcgagaaagccaagcggctggtggaacacaaacaggacgtg
gtgattctgctcgactccatcacccgtctggcgcgcgcctacaacaccgtgcagccgagc
tccggcaaggtgctcaccggtggtgtcgacgcccacgccctggaaaagcccaagcgcttc
ttcggcgcggcgcggaacatcgaggaaggcggcagcctgaccatcctcgccaccgccctg
gtggagaccggctccaagatggacgaagtgatctacgaggagttcaagggcaccggcaac
atggaactgcacctggaccgcaaggtggcggaaaagcgtgtgttcccggccatgaacatc
aagcgctccggcacccgccgcgaagagcggctggtgagcgaggacgagctgcagaagatg
tggattctgcgcaaggtcctccatccgatggacgaaatcggcgccatggaattcctgatc
gaccgcatgaagcagaccaagaccaatgcggaattcttcgattccatgaagcgcaagtaa
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