Azotobacter vinelandii CA: AvCA_03540
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Entry
AvCA_03540 CDS
T02633
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
avl
Azotobacter vinelandii CA
Pathway
avl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AvCA_03540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avl03019
]
AvCA_03540
Enzymes [BR:
avl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AvCA_03540
Messenger RNA biogenesis [BR:
avl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AvCA_03540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AGK17332
LinkDB
All DBs
Position
complement(332909..334582)
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AA seq
557 aa
AA seq
DB search
MSFASLGLSEALVRAVEAAGYAQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPVL
ERLFPGGHPDKEHRHGPRQARVLVLTPTRELAAQVHDSFKLYARDLKLVSACIFGGVGMN
PQVQALSRGVDVLVACPGRLLDLVGQGSVDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPPKRQNLLFSATFSADIVNLTNKLLHDPERIEVTPPNTTVERIEQRVFRLPAGHKRALL
AHLVTQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKSGTI
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTRQSIPEGDWAGFDIGAVEAEKPEVREAHPPRNASAGRKDKGKDKGQEKSREK
TRRRPAARNATRRPRAPVSRAARSRRPRRNPPASRRSPCCRRIAIPRNSSTTISTTSATA
PTTSAPTRTSRSAAAVRARTARRPAVVRARGKGRGKAKVRASAARSARASRHAAHRYRPT
AAKRPARKRRASLNGNR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcgggctttccgaggcattggtccgcgccgtcgaggccgccggc
tatgcccagcccactcccgtgcaacagcgggccatccccgccgtgttgcaaggccgcgac
ctgatggtcgccgcccagaccggcaccggcaagaccggcggcttcgcgctccccgtactc
gaacgactgttccccggcggccacccggacaaggaacaccgccatggtccgcgccaggcc
cgcgtgctggtgctgaccccgacccgcgagctggcggcccaggtgcacgacagcttcaag
ctctacgcccgcgacctgaaactggtcagcgcctgcatcttcggcggggtcggcatgaat
ccgcaggtccaggccctgtcccgcggcgtcgacgtgctggtggcctgtcccggacgcctg
ctcgacctggtcggccagggcagcgtcgacctctcccacgtggagatcctggtgctcgac
gaagccgaccgcatgctcgacatgggcttcatccacgacgtcaagaaggttctcgccaag
cttccgcccaaacgccagaacctgctgttctcggcgaccttctcggcggacatcgtcaac
ctcaccaacaagctgctgcacgaccccgaacgcatcgaggtgaccccgccgaacaccacg
gtggaacgcatcgagcagcgcgtcttccgcctgccggccggccacaagcgcgccctgctc
gcccacctggtcacccagggcgcctgggagcaggtgctggtgttcacccgtaccaagcac
ggtgccaaccgccttgccgaatacctcgacaagcacggcctgccggccgcggcgatccac
ggcaacaagagccagaacgcccgcaccaaggccctggccgacttcaagagcggcaccatc
cgcatcctggtcgccaccgacatcgccgcccgcggcctggacatcgaccagttgccccat
gtggtcaacttcgaactgcccaacgtcgaggaggactacgtccaccgcatcggccgcacc
ggccgcgccggccgcagcggcgaggcgatctcgctggtcgccccggacgaggagaagctg
ctcaagtccatcgagcgcatgactcgccagagcattccggaaggcgactgggcgggcttc
gacataggcgccgtcgaggcggagaaacccgaggtccgcgaagcgcacccgccgcgcaac
gccagtgccggacgcaaggacaagggcaaggacaagggccaggagaaatcccgggaaaaa
accaggagaaggcccgcggcaaggaacgcgacccgcaggccaagggcgccggtcagccgg
gccgcccgcagccgaaggccaaggcgcaacccgccagccagccgacgatccccatgctgc
cgccgaatcgcgatcccgaggaattcctcgacgacgatatcgacaacttcggcaaccgcg
ccgactacgtcagcccctaccagaacaagtcgcagcgcggccgccgtccgggcacgaacg
gccaggcggccggccgtggtcagagccaggggcaagggcaggggcaaggccaaggtcagg
gccagcgcggcccgaagcgccagggccagcaggcacgccgcgcaccggtaccggcctacc
gcagcgaagcgccccgcgaggaagcgccgcgcaagcctgaacggcaaccgctga
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