Azotobacter vinelandii CA: AvCA_06500
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Entry
AvCA_06500 CDS
T02633
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
avl
Azotobacter vinelandii CA
Pathway
avl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
avl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AvCA_06500 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avl03021
]
AvCA_06500 (rpoA)
03400 DNA repair and recombination proteins [BR:
avl03400
]
AvCA_06500 (rpoA)
Enzymes [BR:
avl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AvCA_06500 (rpoA)
Transcription machinery [BR:
avl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AvCA_06500 (rpoA)
DNA repair and recombination proteins [BR:
avl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AvCA_06500 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
AGK12778
LinkDB
All DBs
Position
619063..620064
Genome browser
AA seq
333 aa
AA seq
DB search
MQSSVNEFLTPRHIDVQAVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLSLSKKGSGAVTAADIQLDHD
VEIVNGGHVIANLADNGALNMKLKVARGRGYEPADARQSDEDESRSIGRLQLDASFSPVR
RVAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDTAPV
VVEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcagagttcggtaaatgagttcctgaccccccgtcacatcgacgtgcaggcggtcagc
ccgacccgtgccaagatcacgctcgagccgctcgagcgcggttttggtcataccctgggc
aacgccctgcgtcgcatcctgctgtcttccatgcccggctgtgcggtagtcgaggccgag
atcgacggcgtgcttcatgagtacagcgccatcgaaggagtgcaggaagatgtcatcgag
atcctgctcaacctgaagggcctggccatcaagctgcatggtcgcgacgaggtcacgctg
agcctgagcaagaagggctccggtgcggtaaccgctgccgatattcagctggatcatgat
gtcgaaatcgtcaatggcggtcatgtaatcgccaacctggcggacaacggcgcactgaac
atgaagctcaaggtggcgcgtggtcgtggttacgagcccgccgatgcccgtcagagtgat
gaggacgaaagtcgcagcatcggtcgtcttcagctcgacgcttccttcagtccagtccgc
cgtgtcgcttacgtggtggaaaacgcccgcgtcgagcaacgtacgaacctggataagctg
gtcatcgatctggaaaccaacggtaccctggatcccgaagaggccatccgccgtgccgcg
actattctgcagcagcaattggccgcgttcgtcgacctcaagggagataccgcgccagtg
gtggtcgagcaggaagacgagatcgatccgatcctcctgcgtccggtcgacgacctggaa
ctgaccgtacgctcggccaactgcctgaaggcggagaacatctactacatcggtgacctg
atccagcgcaccgaggtggagttgctgaagactccgaacctgggcaagaagtccctgacc
gaaatcaaggacgttctggcttcccgtggtctgtccctcggcatgcgcctcgataattgg
ccgcctgcaagtctgaagaaggacgacaaggccacggcctga
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