Azotobacter vinelandii CA: AvCA_10010
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Entry
AvCA_10010 CDS
T02633
Name
(GenBank) DEAD/DEAH box ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
avl
Azotobacter vinelandii CA
Pathway
avl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AvCA_10010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avl03019
]
AvCA_10010
Enzymes [BR:
avl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AvCA_10010
Messenger RNA biogenesis [BR:
avl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AvCA_10010
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Hydrolase
CMS1
Motif
Other DBs
NCBI-ProteinID:
AGK15438
LinkDB
All DBs
Position
951856..953160
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AA seq
434 aa
AA seq
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MTFAYLGLIKPLLRTLPVLGYILPTPVQRQAIPALLAGRDLLVAAQTGSGKTAGFALPVL
QRLTLEGSPAAANSVRALVLVPTRELAEQVHGTIRACGMELPLRTAVAYGGVSINPQMML
LRPGIDVLVATPGRLLDLYRQNAVRFDQLQILVLDEADRMLDLGFSRELEELFVLLPAQR
QTLLCSATFSEEIRQIATGLLRDPLTIEISAPNSAAPSVAQWMIPVDKKRKAELFLHLLE
RERWEQVLVFSRTRKGVERLAEELQQRGYRAGAIHGDLPQPARLRALEQFKADELQVLVA
TDVAARGLDIQGLPLVVNLDLPVAPEYYVHRIGRTGRAGASGEAISLVCADEVEQLAAIE
ALIRQLLPRREEPDFSPEHRVPETALGGVILSKPKQPRQKPAPKFGDRLDDKARPAVEAV
RQMPNLSTPPDRKK
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgacctttgcctatcttggcttgatcaagcctcttctgcggactttgcccgtactcggt
tacatcctgcccacgccggtgcagcgccaggcgattcccgcgttgttggccggccgcgac
ctgctggtggcggcgcagaccggcagcggcaagaccgccggcttcgccctgccggtactg
cagcggctgaccctggagggatcgccggccgccgccaactcggtgcgtgcgctggtgctg
gtgccgacccgcgaactggccgagcaggtccatgggaccatccgtgcctgcggcatggag
ctgccgttgcggaccgcggtggcctacggcggggtgagcatcaatccgcagatgatgctg
ctgcgtccggggatcgacgtgctggtggccacgcccggccggctgctcgacctgtaccgg
cagaacgccgtacgcttcgaccagttgcagatcctcgtgctggacgaggccgatcgcatg
ctcgacctgggcttctcccgcgagctggaagaactgttcgtcctgctgccggcgcagcgc
cagaccctgctgtgttcggccaccttctccgaggagatccgccagatcgccaccggcctg
ctgcgcgacccgctgaccatcgagatcagcgcgcccaactcggcggcgccgagcgtcgcc
cagtggatgatcccggtggacaagaagcgcaaggccgagctgttcctgcatctgctggag
cgcgagcgctgggagcaggtgctggtgttctcgcgcacccgcaagggcgtcgagcggctg
gccgaggaactgcagcagcgcggctaccgggccggcgcgatccacggcgacctgccgcag
ccggcgcgcctgcgcgccctggagcagttcaaggccgacgagctgcaggtgctggtggcc
accgacgtggctgcccgcgggctggacatccagggcctgccgctggtggtcaacctcgat
ctgccggtcgcccccgaatactacgtgcaccgcatcggccgtaccggccgtgccggtgcc
agcggcgaggcgatctcgctggtctgcgccgacgaggtcgaacaattggccgccatcgag
gcgctgatccgccagttgctgccgcgccgcgaggagcccgacttcagccccgagcaccgg
gtgccggaaaccgccctgggtggcgtcatcctgagcaagccgaagcagcccaggcagaaa
ccggcccccaaattcggcgaccggctcgacgacaaggcccggccggcagtggaagcggta
cgccagatgcccaatctgagtacgccgccggacaggaagaagtag
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