Azotobacter vinelandii CA: AvCA_15370
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Entry
AvCA_15370 CDS
T02633
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
avl
Azotobacter vinelandii CA
Pathway
avl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AvCA_15370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avl03019
]
AvCA_15370
03009 Ribosome biogenesis [BR:
avl03009
]
AvCA_15370
Enzymes [BR:
avl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AvCA_15370
Messenger RNA biogenesis [BR:
avl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AvCA_15370
Ribosome biogenesis [BR:
avl03009
]
Prokaryotic type
rRNA helicases
AvCA_15370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
AGK15292
LinkDB
All DBs
Position
1509869..1511545
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AA seq
558 aa
AA seq
DB search
MTQETGGFAALGIHPAVLAAITAVGYEEPSPIQAQAIPVILAGHDMIGQAQTGTGKTAAF
ALPMLSRIDPARREPQLLILAPTRELALQVATAFETYASQLPGVGVVAVYGGAPMGPQLK
ALRQGAQILVATPGRLCDHLRRDEQLLSTVKHLVLDEADEMLKLGFMEDLEVIFAALPES
RQTVLFSATLPHSIREIAEKHLHEPQHVKIAAKTQTVARIDQAHLMVHADQKTAAVLRLL
EVEEFDALIAFVRTKQATLDLAGALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVI
ERVTGQKVAEVHLPGAQQVLDARIRKLTAALQPLLAESESSHGELLDRLTAGLGCSPRAL
AAALLRKATNGQALTLSEVEREQPPVPSVSAPRERRERSDRSMERGVHRERRAPMPLPEG
RVRCRAALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLIELPEDGLERLLGKL
RDTRVAGKQLKLRRYRED
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggagaccggcggcttcgccgcactcggtattcatcccgctgtactcgccgcc
atcaccgcggtgggctacgaagaaccgtcccccatccaggcccaggcgatcccggtgatc
cttgccggccacgacatgatcggccaggctcagaccggcaccggcaagaccgccgccttc
gccctgccgatgctctcgcgcatcgacccggcgcgccgcgagccgcagctgctgatcctc
gcgccgacccgcgagctggccctgcaggtggccaccgccttcgagacctatgccagccaa
ctgcccggtgtcggcgtggtggcggtctacggcggcgcgccgatgggcccgcagttgaag
gcgctgcgccagggcgcgcagattctggtggccactcccggtcgtctgtgcgaccacctg
cgccgcgacgagcaactgctgtccaccgtgaagcacctggtcctcgacgaggccgacgag
atgctcaagctcggcttcatggaggatctcgaagtgatcttcgcggccctgccggaaagc
cgccagacggtgctgttctccgcgaccctgccgcactcgatccgcgagatcgccgagaag
cacctgcacgagccgcagcacgtcaagatcgccgccaagacccagaccgtggcgcgtatc
gaccaggcccacctgatggtccacgccgaccagaagaccgccgccgtgctgcgcctgctg
gaagtcgaggaattcgacgcgctgatcgccttcgtgcgcaccaagcaggccaccctcgac
ctcgctggtgcccttgaagccaagggctacaaggccgccgcactgaacggcgacatcgcc
cagaaccagcgcgagcgggtcatcgagtcgctcaaggatggccgcctggacatcgtcgtc
gccaccgacgtggccgcccgtggtatcgacgtgccgcgcatcacccacgtgttcaacgtc
gacatgccctacgatccggaatcctacgtgcaccgcatcggtcgtaccggccgggccggc
cgcgacggtcgtgccctgctgctggtgaccccgcgcgagcggcgcatgttgcaggtgatc
gagcgggtcaccgggcagaaggtcgccgaggtgcacctgcctggtgcccagcaggtgctg
gatgcgcgcatccgcaagctgaccgccgctctgcagccgctgctggccgagtccgagtcc
agccacggcgaactgctcgaccgcctgaccgccggcctcggctgcagtccgcgcgccctg
gccgcggccctgctgcgcaaggccaccaacggccaggcgctgaccctgtccgaggtcgag
cgcgaacagcctccggtgccgagcgtttcggcgccgcgcgaacgtcgcgagcgcagcgat
cgctccatggagcgcggcgtgcaccgcgagcggcgtgcacccatgcccctgccggagggc
cgggtccgctgccgcgccgccttgggcgcgcgcgacgggatcgccgcgaagaacctgctg
ggcgccatcctcaacgaaggcggtctggcccgcgacgccatcggtcgcatccaggttcgc
gacagcttcagcctgatcgagttgccggaggacggcctcgagcgtctgctcggcaagctg
cgcgacacccgcgtcgccggcaagcaactgaagctgcgccgctatcgcgaagactga
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