Azotobacter vinelandii CA: AvCA_32970
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Entry
AvCA_32970 CDS
T02633
Symbol
rnd
Name
(GenBank) ribonuclease D protein
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
avl
Azotobacter vinelandii CA
Brite
KEGG Orthology (KO) [BR:
avl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
avl03016
]
AvCA_32970 (rnd)
Enzymes [BR:
avl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
AvCA_32970 (rnd)
Transfer RNA biogenesis [BR:
avl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AvCA_32970 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AGK13946
LinkDB
All DBs
Position
complement(3373785..3374912)
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AA seq
375 aa
AA seq
DB search
MAIDIHWIRDDASLASHCARWRQLPFVALDTEFVRVDTFYPQTGLVQVGDGRSAYLIDPL
DIGDWRPLAALLEDPAVVKVLHACSEDLEVLLRLTGSLPLPLFDTQLAAAYLNLGFSMGY
SRLVQAVLGIELPKGETRSDWLQRPLSELQIRYAAEDAVHLAELYVALGARLAEDKRAWT
LEDGAELVANLRREVLPEELYREGRLAWKLSRQQLAVLRELYAWREREARRRDQPRNRIL
RENSLWPLARYQPTDLVGLGRIEDMHPRTVRQDGETLLRLIRESGATPPECWPEPLPEPL
PMEASGLLKRLRAVGQAEAAHLQIAPELALRKKTLEALLKSGFPNGPYRLPDTLRGWRRE
RMGQTLLDCLGGERP
NT seq
1128 nt
NT seq
+upstream
nt +downstream
nt
gtggccatcgacattcactggatccgcgacgatgccagcctcgccagccattgcgcgcgc
tggcggcagttgcctttcgtcgccctcgataccgaattcgtgcgggtcgacaccttctat
ccgcagaccggcctggtgcaggtcggcgacggccgcagcgcctatctgatcgatccgctg
gacatcggcgactggcggccgctggccgctttgctggaagacccggcggtggtcaaggtg
ctgcacgcctgcagcgaggacctggaggtgctgctgcgcctgaccggcagcctgccgttg
ccgctgttcgatacccagttggccgccgcctacctgaacctcggcttttccatgggctat
tcccggttggtgcaggcggtgctgggcatcgagctgcccaagggcgagacccgctccgac
tggctgcagcgtccgctgagcgagctgcagatacgctatgccgccgaggatgccgtgcac
ctggcggaactctacgtcgcgctcggcgcgcgactggcggaggacaagcgcgcctggacc
ctggaggacggcgccgaactggtcgccaacctgcgccgcgaggtgctgcctgaggagctc
taccgcgagggccgcctggcctggaagctgagccgccagcaactggccgtactgcgcgag
ctgtacgcctggcgcgagcgcgaggcgcgccggcgcgaccagccgcgcaaccgcatcctg
cgcgagaacagcctgtggccgctggcgcgctaccagccgaccgacctggtcggcctcggc
cgcatcgaagacatgcacccgcgcaccgtgcgccaggacggcgagaccctgctccgcttg
atccgggaaagcggtgcgacgccgccggagtgctggcccgagcccttgcccgagccgctg
ccgatggaggcctcggggctgctcaagaggctgcgcgcggtcggccaggccgaggccgcg
cacctgcagatcgccccggaactggcgctgcgcaagaagaccctcgaagccctgctgaaa
agcggctttcccaacggcccctaccggttgcccgacacgctgcgcggctggcgtcgcgag
cggatgggccagaccctgctcgattgcctcggcggagaacgaccatga
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