Azotobacter vinelandii CA: AvCA_39440
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Entry
AvCA_39440 CDS
T02633
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
avl
Azotobacter vinelandii CA
Pathway
avl03410
Base excision repair
avl03430
Mismatch repair
avl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AvCA_39440 (recJ)
03430 Mismatch repair
AvCA_39440 (recJ)
03440 Homologous recombination
AvCA_39440 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avl03400
]
AvCA_39440 (recJ)
DNA repair and recombination proteins [BR:
avl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AvCA_39440 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AvCA_39440 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AvCA_39440 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AGK13919
LinkDB
All DBs
Position
complement(3992971..3994680)
Genome browser
AA seq
569 aa
AA seq
DB search
MRIESRPLPEPLPDLGDLPPLLTRLYAARGVQSAAELDKGLAQLLPYRRLKGIEAAVALL
VEALRERRRILFVGDFDADGATASTVGVLGLRLLGAEHVDYLVPNRFEYGYGLTPEIVAV
ALERRPELLVTVDNGISSLDGVAAAKAAGLQVLVTDHHLPGHELPAADAIVNPNQPGCDF
PSKALAGVGVIFYVLLALRARLRELGWFAGRNEPNLAELLDLVALGSVADVVPLDANNRI
LVHQGLARIRAGRARPGLRALLGVAGRDPRRITSTDLGFILGPRLNAAGRLDDMSLGIEC
LLCEDEELAREMAVQLDQLNQDRKAIEQGMQREALAQLRELPVEELPFGLCLFEPDWHQG
VIGILASRLKERYHRPAIAFADAGDDLLKGSARSVPGFHIRDALDAVAARQPGLISKFGG
HAMAAGLSLPRENFAAFAAAFDAEVRRQLRADDLNGRLLSDGPLGIAEFHLDLARALRQA
GPWGQHFPEPLFHGTFQLVQQRLVGERHLKLVVRSECGVLQLDAIAFNIDREQWPNPAVR
WAELAYRLDVNEYRGQESVQLVVVHIEAR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgcgaatcgaatcccgtccactgcccgagcccttgcccgacctgggcgatctgccgccg
cttctgacccggctctatgccgcccgtggcgtgcagtccgccgccgaactggacaagggg
ctggcgcaactgttgccctaccgccggctcaagggcatcgaggcggcggtggcgcttctg
gtcgaggcgctgcgcgagcgtcggcgcatcctcttcgtcggcgacttcgatgccgacggc
gccaccgccagcacggtcggcgtgctcggcctgcgcctgctcggcgctgagcatgtcgac
tatctggtgccgaaccgcttcgaatacggctacggtctgactcccgagatcgtcgccgtg
gccctggagcgccggccggagctgctggtgacggtggacaacggcatttccagcctcgac
ggggtggccgcggccaaggccgccggcctgcaggtgctggtcaccgaccaccatctgccg
ggccacgaactgccggcggcggacgccatcgtcaatcccaaccagcctggctgcgacttc
cccagcaaggccctggccggggtcggagtgatcttctacgtgctgctggcgctgcgcgcc
cgcctgcgcgaactgggctggttcgccgggcggaacgagccgaacctggccgaactgctc
gatctggtcgccctcggcagcgtcgccgacgtggtgccgctggacgccaacaaccgcatc
ctggtccaccaggggctggcgcgcatccgcgccggacgggcgcgaccggggttgcgcgcg
ttgctcggggtggccgggcgcgacccgcgacggatcacttccaccgatctcggcttcatc
ctcgggccgcggctcaacgccgccgggcggctggacgacatgtccctcggtatcgaatgc
ctgctctgcgaggatgaggaactggcccgcgagatggcggtgcagctcgaccagctcaac
caggaccgcaaggccatcgagcaaggcatgcagcgcgaggccctggcccagctcagggaa
ctgcctgtcgaggaactgcccttcggcctctgcctgttcgagccggactggcaccagggg
gtgatcggcatcctcgcctcgcgcctcaaggagcgctaccaccgcccggccatcgccttc
gccgacgccggcgacgatctgctcaagggctcggcgcgttcggtgccggggtttcacatc
cgcgatgcgctggatgcggtggcggcccggcagcctgggctgatcagcaagttcggcggg
cacgccatggccgccgggctgtcgctgccgcgggagaacttcgccgccttcgccgcggcg
ttcgacgccgaagtgcgccgccagctccgcgccgacgacctgaacgggcgactgctctcc
gacggcccgctcggcatcgcggagttccacctcgatctggcccgcgccctgcgccaggcc
ggtccctggggccagcactttcccgagccgctgttccacggcactttccaactcgtccag
cagcgcctggtcggtgagcgccatctgaagctggtggtacgcagcgagtgcggcgtgctg
cagctcgacgccatcgccttcaatatcgatcgcgagcaatggccgaatccggcggtgcgc
tgggccgaactggcctatcggctggacgtcaacgagtaccgtgggcaggagagcgtgcaa
ctggtggtggtgcatatcgaggcgcgctga
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