Azotobacter vinelandii CA: AvCA_42800
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Entry
AvCA_42800 CDS
T02633
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
avl
Azotobacter vinelandii CA
Brite
KEGG Orthology (KO) [BR:
avl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
avl03016
]
AvCA_42800 (truB)
Enzymes [BR:
avl01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
AvCA_42800 (truB)
Transfer RNA biogenesis [BR:
avl03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
AvCA_42800 (truB)
Prokaryotic type
AvCA_42800 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB-C_2
TruB_C_2
PUA_3
Motif
Other DBs
NCBI-ProteinID:
AGK12532
LinkDB
All DBs
Position
complement(4317918..4318835)
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AA seq
305 aa
AA seq
DB search
MTQGKRIRRKVDGILVLDKPHGLTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFG
EATKFSQYLLDADKGYETLMHLGVTTTTGDAEGEVLERRAVQLGRDALESVLADFRGEIS
QVPPMYSALKRDGQPLYKLARAGEVVEREARSVTIARLELLAFEPPFARLAVACSKGTYV
RSLVEDIGRALGFGAHVAELRRTQAGPFGLARTVSLAALEQAHAEGGSEALDPFLLPADS
GLEHWPLLQLSEHSSYYWLHGQPVRAPQSPKFGMVRVQDHTGRFIGIGEVGDDGRIAPRR
LIRSE
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
gtgacccagggtaaacgtatccgccgcaaggtcgacggcatcctggtcctcgacaagccg
catggactgacctccaacgccgcgttgcagaaggtgcgctggcttctgaacgccgagaag
gccgggcataccggtagcctcgacccgttggccaccggtgtgctgccgctgtgtttcggc
gaggcgaccaagttttcccagtacctgctggatgccgacaagggttacgagaccctgatg
catctcggcgtgaccacgactaccggcgacgccgagggtgaggtgctcgagcgacgtgcc
gtgcagctcgggcgcgatgcgctggagtcggtactggcggatttccgcggcgagatcagc
caggtcccgcccatgtattcggcactcaaacgtgacgggcagccgctctacaagctggcc
agggccggcgaggtggtggagcgcgaggcgcgttctgttactattgcgcgcctggaactg
ctggccttcgagccgccgttcgcacggctggcggtggcttgcagcaagggcacctatgtg
cgttccctggtcgaggacatcggccgggcgctcggattcggagcgcacgtcgcggagttg
cgcaggacccaggccggacctttcgggctggcccggacggtcagcctcgcggcccttgag
caggcccatgccgaaggtggcagcgaggcgctcgaccctttcctgctgccggcggacagc
ggtctggagcattggccgttgctgcagctctccgagcacagcagctactactggctgcac
gggcagccggtgcgtgcgccgcagtcgccgaagttcggcatggtgcgggtgcaggatcat
acgggccgcttcatcggtatcggtgaagtgggcgacgacgggcgcatcgcgccgcgtcga
ctgattcggtcggaatga
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