Azotobacter vinelandii CA: AvCA_47000
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Entry
AvCA_47000 CDS
T02633
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
avl
Azotobacter vinelandii CA
Pathway
avl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
avl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AvCA_47000 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avl03021
]
AvCA_47000 (rpoD)
Transcription machinery [BR:
avl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AvCA_47000 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AGK13110
LinkDB
All DBs
Position
4771966..4773828
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AA seq
620 aa
AA seq
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MSVKAQQQSRIKELIARGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDTDALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAHFPGTVDGILAEYQRVTSEGGRLSDILSGYIDPDDDSAVPAEA
EVPVDLKSKSAATPAASEDEDEDESEESDSDDEEGDGGPDPEIARQRFGAVAEQLGRTRV
ALERHGRHSVEGLEALQALASLFMPIKLVPKQYDTLVEQVRDALTRVRAQERAIMQLCVR
DARMPRADFLRQFPGNETDQDWVDLLAKGKAKYAEALGNLADDIKQCQQKLIDLEQKVGL
TIAEIKDINRQMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE
MGREPTPEELGERMDMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIE
VATVESLKEATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPSRSEHLRSFLDE
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtaaaagctcaacagcagtctcgcatcaaagagttgatcgctcgcggccgcgaa
cagggttacctgacctatgccgaggtcaacgaccacctgcccgaggatatttccgatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgaaagt
gccccggatacggatgccctgttgttggccgaagccgacaccgacgaagctgccgccgag
gaagccgccgcggccctggccgccgtggaaaccgacatcggtcgtaccaccgacccggtg
cgcatgtacatgcgcgaaatgggtaccgtggaactgctcacccgcgaaggcgaaatcgag
atcgccaagcgcatcgaggaaggcatccgcgaggtgatgagcgccatcgcccacttcccg
ggcaccgtggacggcatcctcgcggaataccagcgcgtcaccagcgaaggcggccgcctg
tccgacatcctcagcggctacatcgatcccgacgacgattcggcggtgcctgccgaggcc
gaggttcccgtcgatctcaagagcaagagcgccgcgacccccgccgcatccgaggacgag
gacgaggacgagagcgaggaaagcgacagcgacgacgaggaaggcgacggtggtcccgac
ccggagatcgcccgccagcgcttcggcgctgtcgccgagcagttgggcaggacccgtgtg
gctctcgaacggcacgggcgccacagcgtcgagggccttgaggcgctgcaggcgctggcc
agcctgttcatgccgatcaagctggtgcccaaacagtacgacaccctggtcgagcaggtg
cgtgacgccctgacccgcgtgcgcgcccaggaacgcgcgatcatgcagttgtgcgtgcgc
gatgcgcgcatgccgcgcgccgacttcctgcgccagtttcccggcaacgagaccgatcag
gactgggtcgacctcctcgccaagggcaaggccaagtacgccgaagccctgggcaatctg
gccgacgacatcaagcagtgccagcagaagctgatcgacctcgagcagaaggtcggcctg
accatcgccgaaatcaaggacatcaaccgccagatgtccatcggcgaagccaaggcccgc
cgcgccaagaaggaaatggtcgaggccaacctgcgcctggtgatctccatcgccaagaaa
tacaccaaccgcggcctgcagttcctcgatctgatccaggaaggcaacatcggcctgatg
aaggcggtggacaagttcgaataccgccgcggctacaagttctcgacctacgccacctgg
tggatccgccaggcgatcacccgctcgatcgccgaccaggcgcgcaccatccgcatcccg
gtgcacatgatcgagaccatcaacaagctcaaccgcatctcccgccagatgctccaggag
atgggccgcgaacccacgccggaagaactcggcgagcgcatggacatgcccgaggacaag
atccgcaaggtgctgaagatcgccaaggaaccgatctccatggaaaccccgatcggcgac
gacgaggactcgcatctgggcgacttcatcgaggactcgaccatgcagtcgccgatcgag
gtggcgaccgtggaaagcctcaaggaggccacccgcgaagtcctcgccggcctcaccgcc
cgggaagccaaggtgctgcgcatgcgcttcggcatcgacatgaacaccgaccacaccctc
gaggaggtcggcaagcagttcgacgtgacccgcgagcgcatccgtcagatcgaggccaag
gccctgcgcaagctgcgccacccctcgcgaagcgagcacctgcgctccttccttgacgag
tga
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