Archangium violaceum: JQX13_01480
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Entry
JQX13_01480 CDS
T07137
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
avm
Archangium violaceum
Pathway
avm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JQX13_01480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avm03019
]
JQX13_01480
Messenger RNA biogenesis [BR:
avm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JQX13_01480
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QRK08871
LinkDB
All DBs
Position
352424..354067
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AA seq
547 aa
AA seq
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MLHVIPLGGLGEIGLNAMVIACRGELLLIDCGLMFPPMGTLGVDIIVPDFTYLRQNASLL
KGIVLTHGHEDHVGALPYLLNEVPVPVYGTRFTLGMVRGRLEELGLDADLREIEPRNPFR
VGAHFTVEACRVTHTVPDAVGYIVRTPEGPIIHTGDFKLDPDPIDGLRTDLERWGELGDE
GVLCLLSDSTNSERTHETGSERLVEQTFERLFQNVPGRIVVSMFASHLHRIHHVLDLARK
LERKVVTMGRSMARNIEMARQLGYLPSVTDGLFVPLDAAASLPPERLLVLATGSQAEPRA
GLSQLAAGDGPLRLGPGDLVVLSARAIPGNERAVTGLIDQLLWRGARVVYPDVEPGVHVS
GHASQPQQRRVLDLVRPRNFVPIHGEFHHLHRHLATAKESGLAPEQLLLAQDGDLLVFEE
GQGRFGGSVPTGRIYRDRFGNGVVTPDILQERTRLAETGLIVAVLVIDRASLSVLAGPQL
SGQGLNLDEQVLLPRVAADARAFFLEMSPQLRGDDARAREELARAVRRAFKLYTSKRPVV
VPMVIKV
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgctccacgtcattcccctcggcggactcggtgagattggcctcaacgccatggtcatc
gcctgccggggggagctgctcctcatcgactgcggactgatgttccctcccatgggcacg
ctgggcgtggacatcatcgtcccggacttcacctacctgcgacagaacgcctccctgctc
aagggcatcgtcctcacccatggccacgaggaccacgtcggcgccctgccctacctcctc
aacgaggtgcccgtccccgtctacggcacccgcttcaccctgggcatggtgcgcggccgg
ctcgaggagctgggcctcgatgcggacctgcgggagatagagccccgcaatcccttccgc
gtgggcgcccacttcaccgtcgaggcctgccgcgtcacccacacggtaccggacgccgtg
ggctacatcgtccgcacgcccgagggccccatcatccacaccggggacttcaagttggat
ccggatcccatcgacggcctgcgcaccgacctggagcgctggggcgagctcggcgacgag
ggcgtgctctgtctcctgtccgactccaccaactccgagcgcacccacgagacgggcagc
gagcgactcgtggagcagaccttcgagcgcctcttccagaacgtccccggccgcatcgtg
gtgagcatgttcgcctcccacctgcaccgcatccaccacgtgctggacctggcccggaag
ctggagcgcaaggtggtgacgatggggcgcagcatggcgcgcaacatcgagatggcccgc
cagctcggctacctccccagtgtcaccgacggcctcttcgtcccgctcgacgccgccgcc
tcgcttccccccgagcgcctgctggtgctcgccaccggctcccaggcagagccccgtgcc
ggcctctcccagctcgccgcgggtgacggccccctgcgtctgggccccggggacctggtc
gtcctcagtgcccgggccatccccggcaacgagcgcgccgtgaccggcctcatcgaccag
ctcctgtggcgcggggcccgcgtcgtctacccggacgtggagcccggcgtgcacgtgtcc
ggccatgccagccagccccagcagcggcgggtgctggacctggtgcgccccaggaacttc
gtccccattcacggcgagtttcaccacctgcaccgacacctcgccaccgcgaaggagtcc
gggctcgcccccgagcaactcctgctcgcccaggatggagatctgctcgtcttcgaggag
ggccagggccgcttcgggggcagcgttcccaccggccgcatctaccgcgaccgcttcggc
aacggggtggtgacgcccgatatcctccaggagcgtacccggctggccgagacggggctc
atcgtggccgtgctcgtcatcgatcgggccagcctgtccgtcctggcggggccgcagctc
tccgggcagggcctgaacctggacgagcaggtgctgctgccccgggtggccgccgacgcc
cgtgccttcttcctggagatgtccccccaactccgaggggatgatgcccgggcgcgggag
gagctcgcccgcgcggtgcgccgggccttcaagctgtatacatccaagcggcccgtcgtg
gtgccgatggtcatcaaggtgtga
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