Archangium violaceum: JQX13_21565
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Entry
JQX13_21565 CDS
T07137
Name
(GenBank) pectate lyase precursor
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
avm
Archangium violaceum
Pathway
avm00040
Pentose and glucuronate interconversions
avm01100
Metabolic pathways
avm02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
avm00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
JQX13_21565
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
JQX13_21565
Enzymes [BR:
avm01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
JQX13_21565
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Motif
Other DBs
NCBI-ProteinID:
QRK13739
LinkDB
All DBs
Position
complement(5027165..5028700)
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AA seq
511 aa
AA seq
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MFLAVALMAACGGDDGSVTSPLMTTGSLAAVAAPAAVIDAKTLTDTTAPLLLPKAGTRTY
SAPVETESGHDPSNYKPAPVVPNIVPATSDPTGGVLTFERETAPLEGWHAWARNGAAGTH
RQVLVTGGSSAAANRIYTVFTKEQLVNAIREARNEPKIIRVVGHIDFRVDGGVFREYTSF
DDLKSGGSLFIPSNTTLVGINDANGRPARISGTQLLIGNENGNFEVDFKAWVAAGKNPDT
FPGWTRNVIVRNLAIDVMWDVNPEDSANAYADGICVSWAQNVWIDHITLTDLPTPSSLSS
DTRHDGGLDVVRGSDYVTISNSHFTVHGKMSLVGNSDAGRQWSDEGRLHVTFTGNHWEGV
NSRTPRVRYGQVHIYNNLVTGDTRPSVANGTLPPGAAASDVKFESAIGVGYKADILAENN
YYNMKTLKPKEVCGKLVVDHGKGVSFRSRGARFISNKDDAGKPMTATIDVELQGCDGIPV
ANLWTPPYGYTLKTADDAKAAILANVGAGKL
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
gtgtttctggcggtagcgctgatggcggcctgtggaggtgatgacggttccgtcacgagc
cctctcatgaccaccggctcactggcggccgtggccgcgcccgccgcggtgatcgacgcg
aagaccctgacggataccacggcacctctgttgctgccgaaggccgggacccggacctac
agtgctccggtcgagacggagagcggccatgatccgtccaattacaagcccgcgccggtg
gtcccgaacatcgtgccggccacgagtgatccaacgggcggcgtgctgaccttcgagcgc
gagacggcccccctggaaggctggcacgcctgggcgcgcaacggagcggctggcacgcat
cgccaggtgctggtcaccggcggctcctcggcggcggccaaccggatctacaccgtcttc
accaaggagcagctggtcaatgccatccgcgaggcccggaacgagcccaagatcatccgg
gtcgtcgggcacatcgacttccgggtggatgggggcgtgttccgggagtacaccagcttc
gacgatctgaagagcggtggctccctcttcattccgtccaacaccacgctcgtgggaatc
aacgacgcgaatggcagacccgccaggatttccggtacgcagctcctgatcggcaacgag
aacggcaacttcgaggtggatttcaaggcctgggtggccgcgggcaagaacccggacacc
ttcccgggttggacgcgcaacgtcatcgtccgcaacctggccatcgacgtcatgtgggac
gtgaacccggaggattcggccaatgcctatgccgacggcatctgcgtctcctgggcgcag
aatgtctggatcgaccacatcaccctgacggatctgccgacgccttcgtccctgtcctcg
gatacccgccatgacggaggcctggacgtggtgcgtggctccgattacgtcaccatctcc
aacagccatttcaccgtgcacggcaagatgagcctggtgggcaacagcgatgccgggcgg
cagtggagcgatgaaggccgtctccatgtcaccttcaccggaaaccactgggaaggcgtg
aacagccggacgccgcgcgtgcgctatggccaggtgcacatctacaacaacctggtgacg
ggcgacaccaggccgagcgtcgccaatggcaccctcccccccggcgcggccgcgtctgac
gtcaagttcgagagcgcgatcggcgtgggctacaaggccgacatcctggccgagaacaac
tactacaacatgaagaccctgaagccgaaggaggtctgcggcaagctggtggtcgatcat
ggcaagggggtgagcttccgcagcaggggggcccgcttcatcagcaacaaggacgacgcg
ggcaagcccatgacggcgacgatcgacgtggagttgcagggctgtgacggaatcccggtg
gccaacctctggacgccgccctatggctacacactgaagacggcggacgacgccaaggcc
gcgatcctggcgaacgtcggcgcgggcaagctgtag
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