Archangium violaceum: JQX13_21890
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Entry
JQX13_21890 CDS
T07137
Name
(GenBank) sigma 54-interacting transcriptional regulator
KO
K15836
formate hydrogenlyase transcriptional activator
Organism
avm
Archangium violaceum
Brite
KEGG Orthology (KO) [BR:
avm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
avm03000
]
JQX13_21890
Transcription factors [BR:
avm03000
]
Prokaryotic type
Helix-turn-helix
Other families
JQX13_21890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
GAF_2
AAA_5
AAA_16
AAA
Mg_chelatase
HTH_8
AAA_2
AAA_22
Aminotran_1_2
GAF_3
IstB_IS21
nSTAND3
Hpr_kinase_C
Motif
Other DBs
NCBI-ProteinID:
QRK12442
LinkDB
All DBs
Position
complement(5101587..5103233)
Genome browser
AA seq
548 aa
AA seq
DB search
MLSEALQSIALAVAQVRSVDEVLDAVVRGLAAQPEWALARLWLTRPGDLCAACPMRAECP
DTSRCLHLVASAGTPRQARRQWTRLDGRFRRFPLGVRKVGRIATTGQGVLLQRLEGDAGW
LVDRAWAEREGIRAFAGQPLVFRGEVLGVLAVFSRRELGAREFSWLRTFADHAAVAITNA
RAFEELARLRERLEQERDYLREEVRDALSFGDIVGRSAPLQRVFQQLEPVAATNASVLIL
GESGVGKELVARALHERGPRRGRPLIRVNCASIPRELFESEFFGHVKGAFTGALKDRAGR
FQLADGGTLFLDEVGEIPLELQGKLLRVLQEGTFERVGEDVTRRVDVRVIAATNRDLTRE
VQEGRFRRDLYYRLSVFPIEVPPLRERKEDIPLLAAHFVRQARARLGRPTLALGAAQIET
LQRYDWPGNVRELENVIERAVILSQGAETLRLDLALPETARRVRAPTPRPATSPVPTFVT
DAEFRRRERENLQAALDAAGGRIYGREGAAALLGIRPTTLASRMKALGIPKPSNPSSNHP
SPTGRGTG
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgctctcggaagcactccaatccatcgcactggcggtggcgcaggtgcgctcggtggac
gaggtgctggacgccgtggtgcgcggactggcggcccagccggaatgggcgctcgcccgc
ctgtggctgacgcggcccggcgacctgtgcgccgcctgccccatgcgcgccgagtgtccc
gacacctcgcggtgcctgcatctggtggccagcgcgggcacaccccggcaggcgcgcagg
cagtggacacgcctcgatggccgcttccgccgattcccactgggcgtgcggaaggtgggg
cgcatcgccaccacggggcagggcgtgctgctacagcggctggagggggacgcggggtgg
ctcgtcgaccgggcctgggccgagcgcgagggcatccgggccttcgccggacaaccgctc
gtcttccggggcgaggtgctgggcgtgctggccgtgttcagccgccgcgagctgggcgcg
cgcgagttctcctggctgcgcaccttcgcggaccacgcggcggtggccatcacgaacgcg
cgagccttcgaggagctggcgcggctgcgcgagcgactggagcaggagcgggactacctg
cgcgaggaggtccgggacgcgctgtccttcggggacatcgtgggacggagcgcacccctg
caacgcgtcttccagcagctcgagccggtggcggccacgaacgccagcgtgctcatcctc
ggggagtcgggcgtgggcaaggagctggtggcgcgagccctccacgagcgaggcccccga
cggggccggccactcatccgagtcaactgcgcctccattccccgggagctcttcgagagc
gagttcttcggccatgtgaagggagccttcaccggggcgctgaaggaccgggccggacgc
ttccagctcgcggatggaggcacgctcttcctggacgaggtgggggagattccgctggag
ctccagggcaagctgctgcgcgtgctgcaggagggcaccttcgagcgcgtgggcgaggac
gtgacacgccgggtggatgtgcgcgtcatcgccgccacgaaccgcgacctcacacgagaa
gtccaggagggccgcttccggagggacctctactaccggctcagcgtcttccccatcgag
gtgccaccgctgcgcgagcgaaaggaagacatccccctgctcgccgcccacttcgtgcgc
caggcccgcgcgagactcggccgccccaccctggcgctcggtgcggcgcaaatcgagacg
ctccaacgctacgactggccgggcaacgtgcgcgaactggagaacgtcatcgagcgagcc
gtcatcctctcgcagggcgcggagacactgcgcctggacctggccctaccggaaaccgcg
agacgcgtgcgagcacccacacccaggccagcgacatccccggtgccgaccttcgtcacg
gacgccgaattccgccggagggagagggagaacctccaggccgcgctggatgcggcggga
ggaaggatctacggccgagagggagccgccgcgctgctgggcatacgacccacgacactg
gcctcgagaatgaaggcactcggaatcccaaaaccgagcaacccctcgagcaaccacccc
tctcccactgggagagggacggggtga
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