Archangium violaceum: JQX13_23185
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Entry
JQX13_23185 CDS
T07137
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
avm
Archangium violaceum
Pathway
avm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
avm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JQX13_23185 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avm03400
]
JQX13_23185 (mfd)
Enzymes [BR:
avm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JQX13_23185 (mfd)
DNA repair and recombination proteins [BR:
avm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
JQX13_23185 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QRK12679
LinkDB
All DBs
Position
complement(5411225..5414806)
Genome browser
AA seq
1193 aa
AA seq
DB search
METPFNQKFEAEALRAPPVTGDPFARVLELLRVGQRVRTQGLQGAARGHALARLTRTLEA
PLVCIATDEESADALAQDLAFFLGGRGTPREPRVLRLPADEVLPYDEISPDPDAVADRLG
ALFHLSQGTRFPALVLSMRGLFRKVLPPHVMKELSERVGVGQDFDRDELARKLANMGYQS
SPLVEDLGTFSVRGGLIDVFSPLYDKPVRIEFFGDTIESIRAFDPETQRTVDSLKEIILL
PAREVIFSEQTRARAEAAARAVADRINLPTSKLRERLDAIREGLPGFGLEGLLPGFFEGG
LGTVFDYLRLWHPEPLFYLDDPMGLERVAEELWNDVERSARASDERQDLSAPAEEHFLTR
EQVDQKLAAFRVMEGGGLSLTQGEAPPVHFPFGTTQDVREAILAHHGEEGALTPLVERLQ
RWRDTRIACAVACGTLSQADRLKRLLLDRNVMVRVHTEPLADVAKLYEPSVSAHLFTGEV
SHGFVDGAGGIAVLSDEEIFGARARRRVRRSKSLDAFAAGFKDLKEGDIIVHTDFGLGRY
AGLTKMQVNGVPGDFLVLEYAGKDKIYLPVGRMRLIQKFTGGDPTKVTLDKLGGTSWEKT
KKRVKEQLLKMAADLLNIAAARRAHPGHAFSPPDRYYAQFEADFEFEETPDQAKAIEDVL
ADMQKREPMDRLVCGDVGYGKTEVAMRAAFKATLDRKQVAVLVPTTVLAQQHYLSFKKRF
KDYPVTVEVISGMKKPPEVREILKRAKEGKVDILIGTHKLLGGDVAFKDLGLLVVDEEQR
FGVKHKEQIKKLRSQVDVLTLSATPIPRTLHMAMSGVREMSIIATPPQDRRAIRTFVMKF
DEQTIKEAIERELARGGQVFFVHNRVESLPAMEETLKRLLPNVSIGVAHGQMGEGQLEKA
MLDFTEKKYQVLLCTSIIESGIDISSANTMIVNRADTFGLAQLYQLRGRVGRSKERAYAY
LLVPARTAISKDAQRRLEVLQRFTELGAGFSIASHDLEIRGAGNLLGAEQSGSIAAIGFD
LYAQLMEEAVSEVRGEPPRTQIEPEITMPIPALIPDDYVPDVHQRLVFYKRFSQASNPDE
VQDLRSELVDRYGEAPDEVDNLSEQTLLKIDMRELRLRALEAGPGRVVVTLGADALLDGM
KVATLVQKSKGVYRLTPDMKLVVKLGAEVRGQSLIAEAKKVLRDLGTCALPQA
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcctttcaaccagaagttcgaggcggaggccctccgcgcacctcccgtgacc
ggggatcccttcgcccgggtgctggagctgctgcgcgtgggtcagcgtgtccgcacgcaa
ggtctccagggggccgcccgcggccatgcactcgcccggctgacacgcaccctcgaggcc
cccctcgtctgcatcgccaccgacgaggagtccgcggatgcgctcgcccaggatctcgcc
ttcttcctgggcggcaggggcaccccgcgcgagcctcgcgtcctgcgcctgcccgccgac
gaggtgctcccctacgacgagatctccccggacccggacgcggtcgcggaccggctcggg
gcgctcttccacctgtcccagggcacgcgcttccccgcgctcgtgctctcgatgcgcggc
ctcttccgcaaggtgctgccgccgcacgtgatgaaggagctgtccgagcgtgtcggcgtg
ggccaggacttcgaccgcgacgagctcgcgcgcaagctcgccaacatgggctaccagtcc
agcccgctcgtcgaggacctgggcaccttctccgtgcgtggcggcctcatcgacgtcttc
agcccgctctacgacaagccggtccgcatcgagttcttcggcgacaccatcgagtccatc
cgcgccttcgatccggagacgcagcgcaccgtggactcgctcaaggagatcatcctcctg
cccgcgcgcgaggtcatcttctccgagcagacgcgcgcgcgtgccgaggccgccgcccgc
gccgtggcggaccgcatcaacctgcccacctcgaagctgcgtgagcgcctggacgccatc
cgcgaggggctccccggcttcggcctggagggcctgctgcccggcttcttcgagggagga
ctgggcaccgtcttcgactacctgcgactgtggcacccggagccgctcttctacctggac
gatcccatgggcctcgagcgcgtcgccgaggaactgtggaacgacgtggagcgctccgcg
cgggcatccgatgagcgccaggatctctccgccccggccgaggagcacttcctcacccgc
gagcaggtggatcagaagctcgcggccttccgtgtgatggagggtggcggcctgtcgctc
acccagggcgaggcgccgcccgtgcacttccccttcggcaccacccaggacgtgagagag
gccatcctcgcccaccatggtgaggagggcgcgctcaccccgctcgtcgagcggctccag
cgctggcgggacacacgcatcgcctgcgccgtggcctgcggcaccctcagccaggcggac
cggctcaagcgcctgctgctggaccgcaacgtgatggtgcgcgtgcacaccgagccactc
gcggatgtggcgaagctctacgagccctcggtctccgcgcacctcttcacgggcgaggtg
agccacggcttcgtggacggcgcgggtggcatcgccgtgctctcggacgaggagatcttc
ggagcgcgggcccgccggcgcgtgcgccgctcgaagagcctggacgccttcgccgcgggc
ttcaaggacctgaaggaaggcgacatcatcgtccacaccgacttcggcctgggccgctac
gcgggcctgacgaagatgcaggtgaacggcgtgcccggggacttcctcgtcctggagtac
gcgggcaaggacaagatctacctcccggtgggccgcatgcggctcatccagaagttcacc
ggtggagaccccaccaaggtgacgctggacaagctgggaggcacgtcctgggagaagacg
aagaagcgggtcaaggagcagctgctcaagatggcggcggacctgctcaacatcgcggcg
gcgcgccgggcgcacccgggccacgccttcagcccgccggaccgctactacgcccagttc
gaggcggacttcgagttcgaggagacgccggaccaggccaaggccatcgaggacgtgctc
gccgacatgcagaagagagagccgatggaccggctcgtctgcggcgacgtgggctacggc
aagacggaggtggcgatgcgcgccgccttcaaggcgacgctggaccgcaagcaggtggcg
gtgctggtgcccaccaccgtgctggcgcagcagcactacctgtccttcaagaagcgcttc
aaggactaccccgtcacggtggaggtcatctccgggatgaagaagccgcccgaggtgcgc
gagatcctcaagcgcgccaaggagggcaaggtggacatcctcatcggcacgcacaagctg
ctgggcggggatgtggccttcaaggatctggggctgctcgtggtggacgaggagcagcgc
ttcggggtgaagcacaaggagcagataaagaagctgcgctcgcaggtggacgtgctcacg
ctgtcggcgacgccgattccgcgcacgctgcacatggcgatgtccggagtgcgggagatg
agcatcatcgccaccccgccgcaggaccggcgcgccatccgcaccttcgtgatgaagttc
gatgagcagaccatcaaggaggccatcgagcgcgagctcgcccgcggcggccaggtcttc
ttcgtgcacaaccgggtggagtcgctgcccgcgatggaggagacgctcaagcggctgctg
ccgaacgtcagcatcggcgtggcacacgggcagatgggcgaggggcaactcgagaaggcg
atgctggacttcaccgagaagaagtaccaggtgctgctgtgcaccagcatcatcgagagc
ggcatcgacatctcgagcgccaacacgatgatcgtcaaccgggcggacacgttcggactg
gcgcagctctaccagctgcgagggcgcgtgggccgctcgaaggagcgcgcgtacgcgtac
ctgctggtgccggcgcgcacggcgatcagcaaggacgcgcagcggcgcctggaagtgctg
cagcgcttcaccgagctgggggcgggcttctccatcgccagccacgacctggagatccgc
ggcgcgggcaacctgctgggtgccgagcagtcgggctccatcgcggcgatcggcttcgac
ctgtacgcgcagctgatggaggaagcggtgtccgaggtgcggggcgagccgccgaggacg
cagatcgagcccgaaatcaccatgccgattcccgcgctcatcccggacgactacgtgccg
gacgtgcaccagcggctggtgttctacaagcgcttcagccaggccagcaatccggacgag
gtccaggacctgcgctccgagctggtggaccgctacggcgaggccccggacgaggtggac
aacctctcggagcagacgctgctgaagatcgacatgagggagctgcggctgcgcgcgctg
gaggcaggtccgggccgggtggtggtgacgctcggcgcggacgcgctgctggacgggatg
aaggtggcgaccctggtgcagaagtccaagggcgtctaccggctcaccccggacatgaag
ctggtggtgaagctgggcgccgaagtgaggggccagtcgctcatcgcggaagccaagaag
gtgctgcgcgacctcggcacctgcgccctgccccaggcgtag
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