Archangium violaceum: JQX13_40540
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Entry
JQX13_40540 CDS
T07137
Name
(GenBank) 2'-5' RNA ligase family protein
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
avm
Archangium violaceum
Brite
KEGG Orthology (KO) [BR:
avm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
avm03016
]
JQX13_40540
Enzymes [BR:
avm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
JQX13_40540
Transfer RNA biogenesis [BR:
avm03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
JQX13_40540
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
2_5_RNA_ligase2
LigT_PEase
Motif
Other DBs
NCBI-ProteinID:
QRK06334
LinkDB
All DBs
Position
complement(9594838..9595398)
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AA seq
186 aa
AA seq
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MANPAWTHRTAVVFIPPAEVWPPIQAIRRVHDRQVQRWMPHVTLLYPFAPRYELPKLLPA
LEAACSALSPFEATLASFRVFQHRADRSTLWLAPEPRESFARIQAALQAAAPDYTQTSRF
AGGFTPHLSVGQSGSPEQVAELRSRLSETWTPLVFQVAEVSIIAREGDRPFEVVRTLRLG
ATPLPG
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atggccaatccagcgtggacccatcgcacggcggtcgtcttcatcccgcccgccgaagtc
tggccacccatccaggcgatccgacgtgtgcatgatcgccaggtccagcgctggatgcct
catgtcaccctgctctacccgttcgcacctcgctacgagctgccgaagctgctgcccgcg
ctcgaggccgcctgctccgcgctgagccctttcgaggcgaccctcgcctcgttccgggtc
ttccagcaccgcgccgaccggagcaccctctggctcgcgccggagcctcgcgagtccttc
gcgcgcatccaggccgcgctccaggccgccgctcccgattacacccagacctcgcgcttc
gcgggtggcttcacgcctcacctcagcgtgggccagtccggaagccccgagcaggtggcg
gagctccgctcacggctgagtgagacctggacgcccctcgtcttccaggttgccgaggtc
agcatcatcgcgcgtgagggagatcgccccttcgaagtggtgcggacactccgactcgga
gccacgccacttccgggttga
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