Archangium violaceum: JQX13_42440
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Entry
JQX13_42440 CDS
T07137
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
avm
Archangium violaceum
Brite
KEGG Orthology (KO) [BR:
avm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
avm03016
]
JQX13_42440
Enzymes [BR:
avm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JQX13_42440
Transfer RNA biogenesis [BR:
avm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JQX13_42440
Prokaryotic type
tRNA splicing ligases
JQX13_42440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QRK06672
LinkDB
All DBs
Position
10042008..10043471
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AA seq
487 aa
AA seq
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MEPTVEVQQRLSPLLRQIGPALYELDPSFREDMRVPARIVADEELLREMSQDHSMLQLVN
VTTLPGIQGFAIGMPDMHEGYGFPVGGVASTLLPHGVISPGGIGFDINCGVRLLSTGLLH
GEVEALLPALAHDLARSIPTGFGRHGRLSLDLEQLERVLAEGVPYVVDVLGLGTREDLPN
IEAGGHLSGADASRISVRARERGHDQLGTLGGGNHFIEVQRVERIYDREAAEAFGLFEGQ
LTVLIHTGSRGLGHQVCTDAVREMDRALAREGIRLVDRQLACAPFSSPEGQDYYAAMCAA
ANFAWCNRQVLTHRVREVFSRRLGSQPECWPRIVYDVAHNIAKVETYGGERLCVHRKGAT
RAFGPGNAELPAAYQQVGQPVFIPGSMGTASFVLAGRSESRAISLSSACHGAGRRMSRAT
AKRQVVGAELRKELNARGIIVECPSNAELAEEAPTAYKDVDRVVDTVEAAGIARKVARLV
PLAVLKG
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggaacccaccgtcgaagtccagcagcggctctcaccgctccttcgccagatcggcccg
gccctctacgagctggacccgagcttccgtgaggacatgcgcgtgccggcccggatcgtc
gccgacgaggagctgctgcgggagatgtcccaggaccacagcatgctccagctcgtcaac
gtgacgacgctgccgggcatccagggcttcgccatcggcatgccggacatgcatgagggc
tacggcttccccgtgggcggcgtagcgagcaccctgctgccccatggggtcatctcgcca
ggtggaatcgggttcgacatcaactgcggcgtgaggctgctctccaccgggcttctccac
ggagaggtggaggcgctcctaccagccctggcccacgacctggcccggagcattcccacg
ggctttggtcgtcacggccggctgtccctggacctggagcagctcgagcgggtcctcgcc
gaaggggtcccctacgtggtggacgtcctgggactggggacccgggaggacctcccgaac
atcgaggcgggcggccacctctccggcgccgatgcgtccaggatctccgtccgggcaagg
gaacgggggcatgatcaactcgggacgctcgggggcggcaatcacttcatcgaggtgcaa
cgcgtggagcgcatctacgaccgggaggcggccgaggcgttcgggctgttcgaggggcag
ctcaccgtcctcatccacaccggctcacgcgggctggggcaccaggtctgcacggacgcc
gtacgggagatggatcgggcattggcccgggaaggcatccggctcgtggacaggcagctc
gcctgcgcaccgttctcgtcacccgagggacaggactactacgcggccatgtgcgccgcg
gccaacttcgcctggtgcaaccggcaggtgctcacccaccgggtgcgcgaggtattcagc
cggaggctcggctcccagcccgagtgctggccgcggattgtctatgacgtggcccacaac
atcgccaaggtggagacgtacggaggggagcgactgtgcgtccaccgcaagggcgcgacg
cgggcgttcggcccggggaacgcggagctgcccgcggcctaccagcaggtcggccagccg
gtgttcatccccggcagcatgggcacggcctccttcgtgctggcggggcggagcgagtcg
cgagccatctcgctcagcagcgcctgccatggtgcgggccggcggatgagccgggccacc
gcgaagcggcaggtggtcggcgcggagctgcgcaaggagctgaatgcccggggcatcatc
gtggaatgcccctcgaacgcggagctcgcggaggaggcccccaccgcctacaaggacgtc
gatcgggtggtggacacggtggaggccgcgggcatcgcccggaaggtggcacggctggtg
ccccttgcggtgctcaagggctga
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