Archangium violaceum: JQX13_43405
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Entry
JQX13_43405 CDS
T07137
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
avm
Archangium violaceum
Pathway
avm00550
Peptidoglycan biosynthesis
avm01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
avm00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
JQX13_43405 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
avm01002
]
JQX13_43405 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
avm01011
]
JQX13_43405 (dacB)
Enzymes [BR:
avm01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
JQX13_43405 (dacB)
Peptidases and inhibitors [BR:
avm01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
JQX13_43405 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
avm01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
JQX13_43405 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_S13
Peptidase_S11
Motif
Other DBs
NCBI-ProteinID:
QRK06842
LinkDB
All DBs
Position
complement(10278239..10279744)
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AA seq
501 aa
AA seq
DB search
MRRSPFATLLLAALVLPACLPRATTRPPSPPTVASVADALFESVEDEGTLASVFLVDATT
GAPLYARHEHVRLLPASTMKVVSTSAALSAFGPDFRFHTPVRLEGSQLGNLFLGDLVVEA
SGDPSLGSWRFPETTLACEQLAEAIQARGIRQWLGAVRVSNADEGPHGLFGPGWAWDDAA
YAYSAAPTPFVFRENVVDLSLERPEGQDCVSQPRRPITVRYTPSFNELPTVVYLEANAQR
AGLGCVRERGTGRMRCVWRSTAEQCPRKASMRVAIDEPQALFSACVEDALAARGIWRVPV
PPHLAAVPAATTSEPLLEFVSPSLAELVKVTNKESLNLYAERLGLRFTRERTGTESYSAL
RDAMAQELTRRGISTRLLRPVDGSGLSRYNVASARGLAEVIYTSLKEPYAHALLESLPIA
GVDGTLARTGLSNGTRGLIRAKTGTLSGQKAYVGIAERPNDPEHPRVVFALMLGNIDEQP
ALTASQVFERFAEAMVSLPLR
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgcgacgttccccgttcgcgacgctcctgctggcggccctcgtgctgccggcctgcctc
ccccgtgcgacgacccgcccgccgtcacccccgacggtggcctcggtggcggatgcgctc
ttcgagtccgtcgaggacgagggcacgctcgcgagcgtcttcctggtggacgcgacgacg
ggcgcgccgctctacgcacgtcacgagcacgtgcgcctgctgcccgcgtcgacgatgaag
gtggtgtccacctccgcggcgctctccgccttcggcccggacttccgcttccacaccccg
gtgcggctcgagggctcgcagctgggcaacctcttcctcggagatctcgtggtggaggcg
tcgggagatccgtcgctgggctcgtggcgcttccccgagaccaccctggcttgcgagcag
ctcgccgaggcgatccaggcccgcggcatccggcagtggctcggggcggtgcgggtgagc
aacgccgacgaggggccccatggcctgttcggtcccggctgggcatgggatgacgcggcc
tacgcgtacagcgccgccccaactcccttcgtcttccgcgagaacgtggtggacctgtcg
ctggagcgccctgagggacaggactgtgtgtcccagccgcggcggcccatcacggtgcgc
tacaccccgtccttcaacgagctccccaccgtcgtgtacctcgaggcgaacgcccagcgg
gcggggcttggctgcgtgcgcgagcggggcaccgggcgcatgcgctgcgtctggcgctcg
acggcggagcagtgcccgcgcaaggcgtcgatgcgcgtcgcgatcgacgagccccaggcg
ctgttctccgcgtgcgtggaggacgccctggccgcgcgtggcatctggcgcgtgccggtt
ccgccgcatctggccgccgtgcccgcggccaccacgagcgagccgctcctggagttcgtc
agcccctcgctcgccgagctggtgaaggtgacgaacaaggagtctctcaacctctacgcc
gagcggctgggcctgcgcttcacccgcgagcgcacgggcacggagagctactccgcgctg
cgtgacgcgatggcgcaggagctcacccgccggggcatctccacccgtctgctgcggccg
gtggatggcagcggactgtcccgctacaacgtggcctccgcgcgcgggctggcggaggtc
atctacaccagcctgaaggagccgtacgcccacgcgttgctggagagcctgcccatcgcg
ggagtggacggcacgctcgcgagaaccggactctccaatgggacgcgggggctcatccgg
gccaagacgggaacgctctcggggcagaaggcgtacgtgggcatcgccgagcgccccaat
gatccggagcacccgcgcgtcgtcttcgcgctgatgctgggcaacatcgacgagcaaccc
gcgctcacggccagccaggtgttcgagcgcttcgccgaggcgatggtgtcgctccccctg
cgttga
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