Archangium violaceum: JQX13_45665
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Entry
JQX13_45665 CDS
T07137
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
avm
Archangium violaceum
Pathway
avm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JQX13_45665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avm03019
]
JQX13_45665
03009 Ribosome biogenesis [BR:
avm03009
]
JQX13_45665
Enzymes [BR:
avm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JQX13_45665
Messenger RNA biogenesis [BR:
avm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JQX13_45665
Ribosome biogenesis [BR:
avm03009
]
Prokaryotic type
rRNA helicases
JQX13_45665
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
WSD
Motif
Other DBs
NCBI-ProteinID:
QRK07258
LinkDB
All DBs
Position
10809858..10811582
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AA seq
574 aa
AA seq
DB search
MSTATDTIPTFEELGLGPALVEALGALGYEEPTPIQRAALPPLLAGKDLLGIAATGTGKT
AAFSLPLLQRITPGGKRAPFSTSALVLVPTRELAMQVAEAIHRYGQKLGISVLPLYGGQP
IGQQLRVLKRGVDVVVATPGRALDHLNRQSLLLDSVQTVVLDEADEMLDMGFAEDLEAIL
EATPEEHQTALFSATLPPRIASIAERHLHQPVHVRIAKEKVAPGTGPRVRQTAYIVPGAF
KAATLGRVLDVEAPTAAIVFCRTRTEVDELTVSLNGRGWRAQALHGGMDQAQRDRVLKQF
KSHAVDLLVATDVAARGLDIEKLSHVVNYDVPNAPEAYVHRIGRTGRAGREGVAITLAEP
REHRLLRNIEKLTGQRIEVATVPTVADLRARRLELVRASLREALVAGELDSYRSVVESLA
SEFDLVDVATAAVKLLHDAQVEGNEQEEEDIPTLPPPAQKPPRPGKNARMTERAGARERP
GGPPGAKRRSGPSQDFDMARLFIGVGRHAGVRPADLVGAIAGEAGVEGRRIGAIEIGDNY
SLVEVPEPLADQIITALRQATLRGKKVQVRRDRG
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaccgcaacggacaccatccccaccttcgaagaactgggcctcgggcccgccctc
gtggaggcgctcggcgcgctcggctacgaggagcccacccccatccagcgggccgccctg
cccccgctgctcgcgggcaaggatctgctcggcatcgccgccaccggcaccggcaagacc
gccgccttctccctccccctcctccagcgcatcacccccggaggcaagcgcgcgccgttc
tccacctccgcgctcgtgctcgtccccacgcgcgagctcgccatgcaggtggccgaggcc
atccaccgctacggccagaagctcggcatcagcgtgctgcccctctacggcggccagccc
atcgggcagcaactgcgcgtcctcaagcgcggcgtggacgtcgtcgtcgccaccccgggc
cgcgcgctcgatcacctcaaccgccagtcgctcctgctcgactccgtccagaccgtcgtg
ctcgacgaggccgacgagatgctggacatgggcttcgccgaggacctggaggccatcctc
gaggccaccccggaggagcaccagacggccctcttctccgccaccctgcccccgcgcatc
gcctccatcgccgagcgccacctgcaccagcccgtgcacgtgcgcatcgccaaggagaag
gtcgcgcccggcaccggccctcgcgtgcgccagacggcctacatcgtcccgggcgccttc
aaggccgccacgctcgggcgcgtgctggacgtggaggcccccaccgccgccatcgtcttc
tgccgcacccgcaccgaggtggatgagctcaccgtgtcgctcaacggccggggctggcgc
gcccaggccctccacggcggcatggaccaggcccagcgcgaccgcgtcctcaagcagttc
aagagccacgccgtggatctgctggtcgccaccgacgtggccgcgcgcggactggacatc
gagaagctctcccacgtcgtcaactacgacgtgcccaatgcccccgaggcgtatgtccac
cgcatcggccgcacgggccgcgccgggcgagagggcgtggccatcaccctcgccgagccg
cgcgagcaccggctgctgcgcaacatcgagaagctcacgggccagcgcatcgaagtggcc
accgtgcccaccgtggcggacctgcgtgcccgccggttggagctcgtgcgcgcctccctg
cgcgaggccctggtggccggtgagctcgactcgtaccgctccgtggtggagagcctcgcc
tccgagttcgacctggtggacgtggccaccgccgcggtgaagctgctccacgacgcccag
gtggagggcaacgagcaggaggaggaggacatccccaccctgcccccgcccgcgcagaaa
ccgccccgtccgggcaagaacgcccggatgacggagcgcgccggagcccgggagcggccg
ggtgggccgccgggagcgaagcgccgctcgggcccgtctcaggacttcgacatggcgcgc
ctcttcatcggcgtgggccggcacgcgggcgtacgacccgcggacctggtgggcgccatc
gccggcgaggcgggcgtggagggacgacggatcggcgccatcgagatcggcgacaactac
tccctcgtcgaggtgcccgagcccctcgccgatcagatcatcaccgcgctgcgccaggcc
acgctgcgcggcaagaaggtgcaggtccggcgcgaccggggttga
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