Archangium violaceum: JQX13_47465
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Entry
JQX13_47465 CDS
T07137
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
avm
Archangium violaceum
Pathway
avm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
avm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JQX13_47465 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avm03021
]
JQX13_47465 (rpoC)
03400 DNA repair and recombination proteins [BR:
avm03400
]
JQX13_47465 (rpoC)
Enzymes [BR:
avm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JQX13_47465 (rpoC)
Transcription machinery [BR:
avm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JQX13_47465 (rpoC)
DNA repair and recombination proteins [BR:
avm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JQX13_47465 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QRK07564
LinkDB
All DBs
Position
complement(11222512..11226732)
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDIFNFFEKPKDPLSFNAIRIALASPDKIRQWSHGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECNCGKYKRMKHRGVVCEKCGVEVIQSKVRRERLGHITLATPVAHIWFLKSL
PSRIGNLLDITLKELEKVLYCESYIIIDPKATPLQRGELVSEEKLHRLYEEHGEDSFSAG
MGGEAVREMLKSIDVARLSEDLRRDMRETNSEAKKKKYAKRLKVAEAFRMSGNKPEWMML
DVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLQELNAPDIIIRNEKRML
QEAVDALFDNGRRGKTITGPNKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
ELRLHQCGLPKIMALELFKPFIYNKLEEKGYVTTIKSAKKMVEKERPEVWDILEDVIREH
PVLLNRAPTLHRLGMQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQME
ARVLMMSTNNILSPANGKPIIVPTQDMVLGIYYMTRAREFAHGEGRVFSSPDEVRAAYDH
GEVHLQAKIVCRIQGKRKETTVGRVLLWDIVPRKVGFDAINKVLDKKSLGALIDLCYRLT
GEKETVLLADRIRSLGYTNATRAGISIALKDMIIPAKKQEFLDFARKEVAEIENQYLEGL
ITDGERYNKVIDIWAEITEKVAAEMMQQISQDEAVGERDGKREVRKQPSFNPIYIMADSG
ARGSAQQIRQLAGMRGLMAKPSGEIIETPITANFREGLSVLQYFISTHGARKGLADTALK
TANSGYLTRRLVDVAQDAIINEYDCGTMDGLFIGALVEGGEIIEALGERILGRVALDDIL
DPVTNDVLVRANEEIDEDRVKRIENSGLDKVKIRSVLTCQAKRGICVECYGRDLARGRKV
SVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAATRRAEQSSLENRNAGLVKFAGLNTVQKK
DGSLVAMNRNGEIVIVDESGRERERYQVIYGARILVKEGQRLEAGTLLAEWDPFAIPLLT
EVGGIVRFEDIIEGVTMNESLDEVTGLSRKTVVESKDPEARPRITIRDEQGNTKDLISSK
APASYFLPQGSIITVNDGDEIHAGEVIAKVPRETTKTKDITGGLPRVAELFEARKPKDAA
AIAEIDGVVSFGKDTKGKRKLILTPEVNGELRTDLAKEYLISKGKNISVHAGDRVKAGEA
LMDGSANPHDILKVLGEKALAGYLVDEVQEVYRLQGVKINDKHIEVIVRQMLRRVRVTDV
GDTSFLVDEQVEKYVFEEENEKVMAQGQRPAVGEPLLLGITKASLSTESFISASSFQETT
KVLTEAAINGKVDYLRGLKENVIMGRLIPAGTGLPNYKYLDIEVESPADEISEMEAALAA
THGDDVAPSLSPTGGRSEGSQTSGAA
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaggacattttcaacttcttcgagaagccgaaggatccgctctcgttcaacgccatc
cgcatcgcgctggcgtcgccggacaagatccgccagtggtcgcacggcgaggtgaagaag
cccgagacgatcaactaccgcaccttcaagccggagcgggacggcctgttctgcgcccgc
atcttcggcccggtgaaggactacgagtgcaactgcggcaagtacaagcgcatgaagcac
cgtggcgtcgtgtgcgagaagtgcggcgtggaggtcattcagtccaaggtgcgccgtgag
cgcctgggccacatcacgctcgccacgcccgtggcgcatatctggttcctcaagtcgctg
ccctcgcgcatcggcaacctgctcgacatcacgctcaaggagctcgagaaggtcctctac
tgcgagagctacatcatcatcgacccgaaggcgacgccactgcagaggggcgagctcgtc
agcgaggagaagctccaccggctctacgaggagcacggtgaggactccttctccgctggc
atgggcggtgaggccgttcgcgagatgctgaagtccatcgatgtcgcgcgcctgtccgag
gacctgcgccgcgacatgcgcgagaccaactcggaggcgaagaagaagaagtacgccaag
cgcctcaaggtggccgaggccttccgcatgtccggcaacaagccggagtggatgatgctg
gacgtcatccccgtcatcccgcccgacctccgtcccctggttcccctggacggtggccgc
ttcgcgacgtccgacctcaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctc
aagcggctgcaggagctgaacgcgccggacatcatcatccgcaacgagaagcggatgctc
caggaggccgtcgacgcgctgttcgacaacggccgccgcggcaagacgatcaccggcccc
aacaagcggccgctgaagtccctctccgacatgctcaagggcaagcagggccggttccgt
cagaacctgctcggcaagcgcgtggactactccggtcgctccgtgatcgtggtgggcccc
gagctgcgcctgcaccagtgcggcctgccgaagatcatggcgctcgagctcttcaagccg
ttcatctacaacaagctcgaggagaagggctacgtcaccaccatcaagagcgccaagaag
atggtggagaaggagcgtcccgaggtctgggacatcctcgaggacgtcatccgcgagcac
ccggtcctcctgaaccgtgcgccgaccctgcaccgcctcggcatgcaggccttcgagccc
gtgctcatcgagggcaaggccattcagctccacccgctggtgtgcgccgccttcaacgcc
gacttcgacggcgaccagatggccgtgcacgtgccgctctccatcgaggctcagatggag
gcccgcgtgctgatgatgtcgaccaacaacatcctcagccccgccaacggcaagcccatc
atcgtccccacgcaggacatggtgctcggcatctactacatgacgcgcgcccgtgagttc
gcccacggcgagggccgcgtgttctcgtccccggacgaggtgcgcgccgcgtacgaccac
ggcgaggtgcacctgcaggcgaagatcgtctgccgcatccagggcaagcgcaaggagacc
accgtcggccgcgtcctcctgtgggacatcgtgccgcgcaaggtgggcttcgacgccatc
aacaaggtgctcgacaagaagtcgctcggcgcgctcatcgacctctgctaccgcctcacc
ggcgagaaggagacggtgctgctggccgaccgcatccggtcgctcggctacaccaacgcc
acccgcgccggtatctccatcgcgctcaaggacatgatcatccccgcgaagaagcaggag
ttcctggacttcgcgcgcaaggaggtcgcggagatcgagaaccagtacctcgagggtctc
atcaccgacggcgagcgctacaacaaggtcatcgatatctgggcggagatcaccgagaag
gtggccgccgagatgatgcagcagatctcccaggacgaggccgtgggcgagagggacggc
aagcgcgaggtgcgcaagcagccgtcgttcaaccccatctacatcatggccgactccggt
gcccgcggcagcgcccagcagatccgccagctggctggtatgcgtggcctcatggccaag
ccctcgggtgaaatcatcgagacgcccatcacggccaacttccgtgaaggcctctccgtg
ctgcagtacttcatctccacccacggcgcccgcaagggtctggcggacacggccctcaag
acggccaactccggttacctcacccgccgtctcgtggacgtggcgcaggacgccatcatc
aacgagtacgactgcggcaccatggacggcctgttcatcggcgccctggtcgagggcggc
gagatcatcgaggcgctcggtgagcgcatcctcggccgcgtggccctggacgacatcctc
gatccggtgacgaacgacgtgctcgtgcgcgccaacgaggagatcgacgaggatcgcgtc
aagcgcatcgagaacagcggcctcgacaaggtgaagatccgctcggtgctcacctgccag
gccaagcgcggcatctgcgtggagtgctacggccgtgatctggcccgtggtcgcaaggtg
tccgtcggcgaggccgtgggcgtcatcgcggcgcagtccatcggtgagccgggtacccag
ctcacgatgcgcaccttccacatcggtggtgcggcgacgcggcgcgccgagcagtccagc
ctcgagaaccgcaacgcgggtctggtgaagttcgccggcctcaacacggttcagaagaag
gacggcagcctggtggccatgaaccgcaacggcgagatcgtcatcgtcgacgagagcggc
cgtgagcgcgagcgctaccaggtcatctacggcgcccgcatcctcgtgaaggaggggcag
cggctcgaggccggcaccctgctggccgagtgggatccgttcgccatcccgctgctcacc
gaggtcggcggtatcgtgcgcttcgaggacatcatcgaaggcgtcacgatgaacgagtcg
ctggacgaggtgaccggcctcagccgtaagacggtcgtcgagtccaaggaccccgaggcc
cgtccgcgcatcaccatccgtgacgagcagggcaacaccaaggacctgatctcctccaag
gctccggcgagctacttcctgccgcagggctccatcatcaccgtcaacgacggcgatgag
atccacgccggtgaggtcatcgccaaggtgccgcgcgagaccacgaagaccaaggacatc
acgggcggtctgccccgcgtggccgagctcttcgaggcgcgcaagcccaaggacgccgcg
gccatcgcggagatcgacggcgtggtctccttcggcaaggacaccaagggcaagcgcaag
ctcatcctcacccccgaggtgaacggcgagctgcgcaccgacctggccaaggagtacctg
atctccaagggcaagaacatcagcgtgcacgccggcgatcgcgtcaaggccggcgaggcg
ctcatggacggctcggccaacccgcacgacatcctcaaggtgctcggcgagaaggcgctc
gcgggctacctggtggatgaggtgcaggaggtctaccgactccagggcgtgaagatcaac
gacaagcacatcgaggtgatcgtccggcagatgctccgccgcgtgcgcgtcaccgacgtg
ggcgacaccagcttcctcgtcgacgagcaggtcgagaagtatgtgttcgaggaggagaac
gagaaggtcatggcgcagggccagcgtcccgccgtcggcgagccgctgctgctcggcatc
accaaggcctcgctctccaccgagtcgttcatctcggcgtcctccttccaggagaccacc
aaggtgctcaccgaggccgccatcaacggcaaggtggactacctgcgcggcctcaaggag
aacgtcatcatgggccgcctcatccccgccggtacgggtctgcccaactacaagtacctc
gacatcgaggtggagagccccgccgacgagatctccgagatggaggccgccctggccgcc
acccacggcgatgacgtcgctccgtccctgtcgcccaccggcggtcggtccgagggctcc
cagaccagcggtgccgcctag
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