Archangium violaceum: JQX13_48035
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Entry
JQX13_48035 CDS
T07137
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
avm
Archangium violaceum
Brite
KEGG Orthology (KO) [BR:
avm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avm03032
]
JQX13_48035 (topA)
03400 DNA repair and recombination proteins [BR:
avm03400
]
JQX13_48035 (topA)
Enzymes [BR:
avm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JQX13_48035 (topA)
DNA replication proteins [BR:
avm03032
]
Prokaryotic type
DNA Topoisomerases
JQX13_48035 (topA)
DNA repair and recombination proteins [BR:
avm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JQX13_48035 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
MCEL_TPase
Zn_ribbon_recom
MIS13
Motif
Other DBs
NCBI-ProteinID:
QRK07660
LinkDB
All DBs
Position
complement(11356472..11359069)
Genome browser
AA seq
865 aa
AA seq
DB search
MATRTKKTATAGEMEGEETATPKKAAKKPAARKKTAAKKKTAAKKASSRRKVGDGALATV
EASAEDGEATDSPKRGKGPHYLVVVESPAKAKTIKKYLGSGYTVKASVGHILDLPKSKMG
VDLEHDFEPQYEVIKGKEKVLSELKKAAQGVDKVFLATDPDREGEAIAWHINQQLGHQNA
YRVMFNEITKSAIQEAIAQPRQLSQENYDSQQTRRILDRLVGYQISPLLWKKVRRGLSAG
RVQSVAVRLICEREDEIKAFVPQEYWTLDALLEGPAGPPPFKAKLSKVDGKKVDLKDRET
TQGLVEELKGSPFVVSKVDKRERRRNAPAPFITSKLQQEAANRLHFTAKKTMALAQRLYE
GVPLGEEGQTALITYMRTDSTRLSDQAVAAVREFIGQTYGADYLPEAPVVYRTKKGAQDA
HEAIRPTSLEYPPSKVKQYFDSMNDDMAADMFRLYELIWNRFVACQTKPAVYDQTSAEIT
AGRATFRASGSTLKFPGYLAIYGASLTPEEEAAQEKARAAGEDTDEDGVGELPVLNDGDA
LSLQKLLDEQHFTQPPPRFSEATLVKELEERGIGRPSTYAAILSTIQDKKYVEKVEGRFR
PTDLGVICNELLVKHFPHELDVAFTAGMEEKLDQISEGEANWKAVLKDFYGPFKETLEKA
EAEMRDVKREEIKTDVACEKCGNVMVIKWGKMGHFLACSNYPECKNTKDFKRDAEGKIVI
IEEETTDEKCENCSKPMVVKRGRFGKFLACSGYPECKTSKPISIGVTCPDCKQGYLTERR
SRFGKVFFGCNRYPDCKFAAWDRPLPEACPSCQSPYLVQKYSKRDGPFIACPNKECDYRR
QIVEPEVAAATSAPAANGPNASSAA
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcgcacgaaaaagacggcaacggcgggcgagatggagggcgaggagaccgcg
acccccaagaaggcagccaagaagccggcggcgcgcaagaagaccgccgccaagaagaag
acggccgccaagaaggcctcctcgcgccgcaaggtgggtgatggggccctggccaccgtg
gaggcctccgccgaggacggcgaggccaccgactcccccaagcggggcaaggggccgcac
tacctcgtggtggtcgagtcgcccgccaaggcgaagaccatcaagaagtacctgggctcc
ggctacacggtgaaggcctcggtgggccacatcctggatctgcccaagagcaagatgggc
gtggacctcgagcacgacttcgagccccagtacgaggtcatcaagggcaaggagaaggtg
ctcagcgagctgaagaaggccgcccagggcgtggacaaggtcttcctggcgacggacccc
gatcgcgagggtgaggccatcgcctggcacatcaaccagcagctgggccaccagaacgcc
taccgggtgatgttcaacgagatcaccaagtcggccatccaggaggccatcgcgcagccg
cgccagctcagccaggagaactacgactcccagcagacgcgccgcatcctggaccggctg
gtgggctatcagatctccccgctgctctggaagaaggtgcgccggggcctgtccgcgggc
cgcgtgcagtccgtggccgtgcgcctcatctgcgagcgcgaggacgagatcaaggccttc
gtcccccaggagtactggacgttggacgccctcctcgagggtcccgccgggcctccgccc
ttcaaggccaagctgtccaaggtggacggcaagaaggtggacctgaaggaccgggagacc
acccaggggctggtggaggagctgaagggctccccgttcgtggtgtccaaggtggacaag
cgcgagcggcgccgcaacgcgccggctcccttcatcacctccaagctgcagcaggaggcc
gccaaccggctccacttcaccgccaagaagaccatggcgctcgcccagcgcctctacgag
ggcgtgccgctcggtgaggagggccagacggcgctcatcacgtacatgcgcacggactcc
acccgtctgtcggatcaggcggtggcggcggtgcgcgagttcatcggccagacctacggc
gcggactacctgccggaggccccggtggtgtaccgcaccaagaagggcgcccaggacgcg
cacgaggccatccgtcccacctcgctcgagtacccgccctccaaggtgaagcagtacttc
gactcgatgaacgacgacatggccgcggacatgttccggctctacgagctcatctggaac
cgcttcgtggcgtgccagacgaagccggccgtgtatgaccagacgagcgcggagatcacc
gcgggccgggccaccttccgggcctcgggctccacgctgaagttccccggttacctggcc
atctacggcgccagcctcacccccgaggaggaggccgcccaggagaaggcgcgcgccgcc
ggcgaggacaccgacgaggacggcgtgggcgagctgcccgtgctcaacgacggggacgcg
ctctccctgcagaagctgctcgacgagcagcacttcacccagccgcctccgcgcttctcg
gaagccaccctcgtcaaggagctcgaggagcggggcatcggccgtccgtccacctacgcc
gccatcctctccaccatccaggacaagaagtacgtggagaaggtggagggccgcttccgg
cccacggacctgggcgtcatctgcaacgagctgctcgtcaagcacttcccccacgagctg
gacgtcgccttcaccgccggcatggaggagaagctggatcagatctccgagggcgaggcc
aactggaaggccgtcctcaaggacttctacgggcccttcaaggagacgctcgagaaggcc
gaagcggagatgcgcgacgtcaagcgcgaggagatcaagaccgacgtggcgtgcgagaag
tgcggcaacgtcatggtgatcaagtgggggaagatgggccacttcctcgcgtgctcgaac
taccccgagtgcaagaacaccaaggacttcaagcgcgacgccgaggggaagatcgtcatc
atcgaggaggagacgaccgacgagaagtgcgagaactgctccaagcccatggtggtcaag
cggggccgcttcggaaagttcctcgcgtgctcgggctaccccgagtgcaagacgtccaag
cccatctccatcggcgtgacgtgtccggactgcaagcagggctacctcaccgagcgccgc
agccgcttcgggaaggtcttcttcggctgcaaccgctacccggactgcaagttcgccgcc
tgggatcggccgctgccggaggcgtgccccagctgccagtctccctacctggtgcagaag
tactccaagcgggacggtccgttcatcgcctgccccaacaaggagtgcgactaccggcgt
cagatcgtcgagccggaggtggccgccgccacctccgctcccgccgccaacggccccaac
gcctcctcggctgcttga
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