Archangium violaceum: JQX13_50190
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Entry
JQX13_50190 CDS
T07137
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
avm
Archangium violaceum
Brite
KEGG Orthology (KO) [BR:
avm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
avm03016
]
JQX13_50190
Enzymes [BR:
avm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
JQX13_50190
Transfer RNA biogenesis [BR:
avm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
JQX13_50190
Prokaryotic type
tRNA splicing ligases
JQX13_50190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Rop-like
Motif
Other DBs
NCBI-ProteinID:
QRK08044
LinkDB
All DBs
Position
complement(11903090..11904247)
Genome browser
AA seq
385 aa
AA seq
DB search
MMPHVLESPPGAVPILAWAREVPAGAVKQLQHIASQPYVVEHVAVMPDVHVAQGVAVGTV
FATERTVVPGALGGDLGCGVSAHRFAFPAASLGRADLERLMAAVARRVPVGDAVHRGAGL
PLPPEVQAASLSTHRLQKDWERLAPRHLATLGGGNHFLELDRDAGGDLWLLIHSGSRGIG
GAIASHHLRVATSMGEGSLPGLRTDSPEGAACLADIAWACRFARANRDALAARAVDVLAE
ALGCEPEPGASVDVHHNHVEEETHLGRVLLVHRKGAVGLEAGQRGLIPGSMGTASYVVEG
RGEPRAFRSCSHGAGRVLTRGEARARIRPAALEQALRRVVFDRGRVHDLVEEAPEAYRDI
AEVLEDEAELVTPLLRLTPIAVLKG
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctcatgtcctcgagagcccgcccggagccgtccccatcctcgcctgggcgcgc
gaggtgcccgcgggggcggtgaaacaactccaacacatcgccagccagccatacgtggtg
gagcacgtggcggtgatgccagacgtccacgtcgcccagggcgtggccgtgggaaccgtc
tttgccaccgagcgcaccgtggtcccgggtgcactcgggggcgacctggggtgcggcgtc
agtgcgcaccggttcgccttcccggcggcgtcactcgggagggcggacctggagcggctg
atggcggccgtggcgcggcgggtgcccgtgggagacgccgtgcaccggggcgcgggcctg
cccctgcctcccgaagtccaggccgcgagcctgtccacccaccggctccagaaggactgg
gagcgcctcgcgccgaggcacctggcgacgctcgggggtggcaatcacttcctggagctg
gaccgggacgcggggggagacctgtggctgctcatccactcgggctcgcgaggcattgga
ggagccattgcctcgcaccatctgcgggtggcgacctcgatgggagagggctcgctgccg
ggccttcgcaccgactctcccgagggagccgcgtgcctggcggacatcgcctgggcctgc
cggttcgcccgagccaaccgggacgccctcgcggcacgagcggtggatgtgctggccgag
gcgctcgggtgcgagccggagccgggagcgagcgtggacgtacaccacaaccacgtggag
gaggagacgcacttgggccgggtgctgctcgtccaccggaagggcgcggtggggctcgag
gccggacagcggggcttgattcccggctcgatgggaacggcctcgtacgtggtggagggg
aggggagagccgagggccttccgctcgtgctcgcacggggcggggagggtgctgacgcga
ggagaggcccgtgcgcgcatccgccctgcggcgctggagcaggcgctgcgccgggtggtg
ttcgaccggggccgggtgcatgacctggtggaggaggcgccagaggcctaccgtgacatc
gcggaggtgctggaagacgaggcggagctggtgacgcccctcctccggctcacgcctatc
gccgtgctcaagggctga
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