Archangium violaceum: JQX13_50800
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Entry
JQX13_50800 CDS
T07137
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
avm
Archangium violaceum
Pathway
avm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
avm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JQX13_50800 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
avm03021
]
JQX13_50800 (rpoD)
Transcription machinery [BR:
avm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JQX13_50800 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_ner
Sigma70_r4
Sigma70_r1_2
FH2
WD40_alt
Motif
Other DBs
NCBI-ProteinID:
QRK08149
LinkDB
All DBs
Position
12040647..12042818
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AA seq
723 aa
AA seq
DB search
MPTQKPSSKVAVKPKKKVAPEIRKKKKSPEEASAKGTESAEASAAPASAKKADKSDRSER
TAAAEKATEALKKRKAVTQVDDGDIDPEEAAEEAAAAVEVDPDAVEDEVDEEPIADRKEV
KDLLAAGREKGFLTYDEVNDALPADIVSSDQIDDVMSMFGDNDIEIVDAQKAAQNTEIKP
TVAVEEERAEADDDEKDEDDEPGGKSNDPVRLYLRKMGSVSLLTREGEVEIAKRIEEGEK
EVLRALLACRVAMVEILDIGNKLKNGKLRVRDVIKDAPEEAQGEGEEAEAEVSEEGADGE
AQPQQLAQSELNKIEQINKQIERIRKFAKDCEALDAELAGKKKLTEVRKKELKQEVKDLR
TKMMEVLEEMRLNKKQVDRIVANLKGLIERVEKAEAELRDIERRYGVPMDTLRELLREAK
EDPEAMKKAQRKLNITAEQLEALERDVRTSTRNIKRVEEEANLEVEELRRNYDAIRLGER
RAERAKTELVEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGYKFSTY
ATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEIGREPTPEEIAEKMELP
LDKVRKVLKIAKEPISLETPIGEEEDSHLGDFIEDKSLVSPSDAVINMNLAEQTRKVLAT
LTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRERIRQIEAKALRKLRHPSRSKRLRSF
VES
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgccgacgcagaagccctcctcgaaggtggccgtcaagcccaagaagaaggtggccccg
gagatccgtaagaagaagaagtccccggaggaagcctcggccaagggaactgagagcgcc
gaggccagcgccgccccggcctccgcgaagaaggcggacaagtccgaccggagcgagagg
accgccgccgcggagaaggccaccgaggcgctcaagaagcgcaaggcggtgacccaggtg
gatgacggcgacatcgatcccgaggaggccgcggaagaggcggccgccgcggtcgaggtc
gatccggacgcggtggaggacgaggtggacgaggagcccatcgcggaccgcaaggaggtc
aaggatctcctggccgccggccgcgagaagggcttcctcacctacgacgaggtcaatgac
gccctgcccgcggacatcgtgtcgtcggatcagatcgacgacgtgatgagcatgttcggc
gacaacgacatcgagatcgtcgacgcgcagaaggccgcccagaacacggagatcaagccc
acggtcgcggtggaggaggagcgcgccgaggccgacgacgacgagaaggacgaggacgac
gagccgggtggcaagtccaacgatcccgtgcgtctgtacctgcgcaagatgggcagcgtg
agcctcctcacccgcgagggcgaggtggagatcgccaagcgcatcgaagagggcgagaag
gaagtcctgcgcgcgctcctggcctgccgcgtggccatggtggagatcctcgacatcggc
aacaagctgaagaacggcaagcttcgcgtgcgcgacgtcatcaaggacgcgcccgaggag
gcccagggtgagggcgaggaggccgaggccgaggtctccgaggagggcgctgacggcgag
gcccagccgcagcagctggcccagagcgagctcaacaagatcgagcagatcaacaagcag
atcgagcgcatccgcaagttcgccaaggactgcgaggcgctggacgcggagctcgccggc
aagaagaagctcaccgaggtgcgcaagaaggagctcaagcaggaggtgaaggatctccgg
accaagatgatggaggtcctggaggagatgcggctcaacaagaagcaggtggaccgcatc
gtcgccaacctcaaggggctcatcgagcgcgtggagaaggcggaggcggagctgcgcgac
atcgagcgccgctacggcgtgcccatggacacgctgcgcgagctgctgcgcgaggccaag
gaagaccccgaggccatgaagaaggcgcagcgcaagctcaacatcaccgccgagcagctc
gaggcgctggagcgcgacgtgcgcacgtccacgcgcaacatcaagcgcgtggaggaggag
gccaacctcgaggtggaggagctgcgccgcaactacgacgccatccgcctgggtgagcgc
cgcgccgagcgcgccaagacggagctggtggaggccaacctgcgtctggtggtgtccatc
gcgaagaagtacacgaaccgcggcctgcagttcctggacctcatccaggagggcaacatc
ggcctgatgaaggcggtggacaagttcgagtacaagcgcggctacaagttctcgacgtac
gccacgtggtggatccgccaggcgatcacgcgcgccatcgcggaccaggcccgcaccatc
cgcatcccggtgcacatgatcgagacgatcaacaagctcatccgcaccagccgctacctc
gtgcaggagatcggccgcgagccgacgcccgaggagatcgcggagaagatggagctgccg
ctcgacaaggtgcgcaaggtgctgaagatcgccaaggagcccatctcgctggagacgccg
atcggcgaggaagaggacagccacctgggcgacttcatcgaggacaagagcctggtgtcg
ccgtcggacgcggtcatcaacatgaacctggccgagcagacgcggaaggtgctggccacg
ctcacgccgcgcgaggagaaggtgctgcgcatgcggttcggcatcggcgagaagagcgac
cacacgctggaagaggtgggccaggacttcgaggtgacgcgcgagcgcatccggcagatc
gaggccaaggcgctgcgcaagctgcgtcacccgagccgctccaagcgtctgcgctccttc
gtggagagctga
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integrated database retrieval system
