Archangium violaceum: JQX13_52740
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Entry
JQX13_52740 CDS
T07137
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
avm
Archangium violaceum
Pathway
avm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JQX13_52740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avm03019
]
JQX13_52740
03400 DNA repair and recombination proteins [BR:
avm03400
]
JQX13_52740
Enzymes [BR:
avm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JQX13_52740
Messenger RNA biogenesis [BR:
avm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JQX13_52740
DNA repair and recombination proteins [BR:
avm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JQX13_52740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
DUF4423
HTH_36
SecA_DEAD
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
QRK08485
LinkDB
All DBs
Position
12477706..12479772
Genome browser
AA seq
688 aa
AA seq
DB search
MRRMPVALPYFEQAQEGLVRHFGLTEFRPGQAQVISSVLSGRNTVVVMPTGAGKSLCYQL
PALLLSGVTLVISPLIALMKDQVEQLTGRGIPATFINSSLSDMERADRLRRMRAGEYKLI
YVAPERFRSPSFLDALAQVGVELLAVDEAHCISQWGHDFRPDYAQLGQVRKRLRPPRTVA
LTATATPEVRDDIIRSLLMKDPQVFAEGFDRPNLFLEVFEVGGDEDKRRACAGLASLGGS
GIIYCSTRKSAENTHASLIERGVNAILYHAGMDDDARRRAQDEFMSAKEAVAVATNAFGM
GIDKPDIRFVAHANIPKAVEAYYQEIGRAGRDRGPAFAALLFNHADVYTQERLIESNHPS
EAVLSDMWNVLRSVPEYDKGLHVLAAQAGASEFEISAALRILEREGKVERGSRGEGEYGI
TLTEKASTTQPHAPDARRLLASLLETFPVGRSATTELPILARRTGLSGDEIQHALKLLER
AGALRVRRPFSGRTIRALSQVPFRELGVDLSKVREQERRSMLHLKRMTDYAYTKRCRRAF
ILQYFGQQDVEPTCGNCDTCAGSRMRRLEGLARSSTAPRATPTLAPGRPEGYSELAATEL
RRWRKELARELEVPPFIIFNDETLRGLAAALPIDRESFLTVKGTGESRWERFGPKVVEIC
LMARAAGHEPVAVAPVPPRVRKSRSARH
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgcgacggatgccggtggccctgccctacttcgagcaagcccaggagggactggtccgc
catttcgggctgaccgagttcaggccggggcaggcccaggtcatcagctccgtgttgagt
gggcgcaacaccgtggtggtgatgcccacgggcgcggggaagagcctgtgctaccagctc
cccgccctgctcctgtccggagtgacgctcgtcatctcccccctcatcgcgctgatgaag
gatcaggtggagcagctcaccggccgtggcatccccgccacgttcatcaactcgtccctg
tcggacatggagcgcgcggaccgcctccgccgcatgcgggcgggcgagtacaagctcatc
tacgtggcgcccgagcgcttccgcagccccagcttcctggacgcgctggcgcaggtgggg
gtggagctgctcgccgtggacgaggcccactgtatttcccagtggggccatgacttccgg
ccggactacgcgcagctcggccaggtgcgcaagcgcctgcgtccgccgcgcaccgtggcc
ctcaccgccacggccacccccgaggtgcgcgacgacatcatccgctccctgctgatgaag
gatccgcaggtgttcgccgagggcttcgaccggcccaacctcttcctggaggtgttcgag
gtcggcggggacgaggacaagcgccgggcctgcgcggggctggcgtcgctgggaggcagc
ggcatcatctactgctccacccgtaagtcggcggagaacacgcacgcgtcgctgatcgag
cggggggtgaacgccatcctctaccacgcggggatggacgatgacgcgcggcgccgcgcc
caggacgagttcatgtccgccaaggaggcggtggcggtggccaccaatgccttcggcatg
ggcatcgacaagccggacatccgcttcgtcgcccacgccaacatccccaaggcggtggag
gcgtactaccaggagatcggccgcgcgggccgcgacagggggccggccttcgccgcgctc
ctcttcaaccacgcggacgtctacacgcaggagcggctcatcgagagcaaccacccctcg
gaggcggtgctctcggacatgtggaacgtgctgcggagcgtgcccgagtacgacaagggc
ctgcacgtcctggccgcccaggcgggcgccagcgagttcgagatctccgccgcgctgcgc
atcctcgagcgcgagggcaaggtggagcgcgggagccgcggcgaaggtgagtacggcatc
accctgacggagaaggcctccacgacccagccccatgccccggatgcccggcgcctgctg
gcctcgctgttggagacgttccccgtggggcgctccgccaccaccgagctccccatcctc
gcgcggcgcaccgggctgtccggcgatgaaatccagcacgcgttgaagctgctggagcgg
gccggagcgctgcgggtgcgccgtcccttctcggggcgaaccatccgcgcgctgtcgcag
gtgcccttccgcgagctgggcgtggacctgagcaaggtgcgcgagcaggagcggcgctcc
atgctgcacctcaagcggatgacggactacgcctacacgaagcgctgccggcgggccttc
atcctccagtacttcggacagcaggacgtggagcccacctgcggcaactgcgacacgtgc
gccgggagccggatgaggcgcctggagggactggcccgctcctccaccgcgccccgcgcc
acgccgacgctggcaccgggacggcccgagggctacagcgagctggccgccaccgagctg
cgccgctggcgcaaggagctcgcgcgcgagctcgaggtgccgcccttcatcatcttcaac
gacgagacgctgcgggggctcgccgcggccctccccatcgatcgcgagtccttcctcacg
gtgaagggcacgggcgagagccgctgggagcggttcggacccaaggtggtggagatctgc
ctcatggcccgcgccgccggccacgaaccggtcgcggtggcccccgtgccgccccgggta
cgcaagtcccggagcgcccgccactga
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