Azotobacter vinelandii DJ: Avin_09990
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Entry
Avin_09990 CDS
T00885
Symbol
hrpB
Name
(GenBank) DEAH-box ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
avn
Azotobacter vinelandii DJ
Brite
KEGG Orthology (KO) [BR:
avn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avn03019
]
Avin_09990 (hrpB)
Enzymes [BR:
avn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Avin_09990 (hrpB)
Messenger RNA biogenesis [BR:
avn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Avin_09990 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
ResIII
Flavi_DEAD
AAA_30
Cas3-like_C_2
HA2_N
Motif
Other DBs
NCBI-ProteinID:
ACO77231
UniProt:
C1DNL5
LinkDB
All DBs
Position
948245..950761
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AA seq
838 aa
AA seq
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MNPLPIDAVLPALREALSLRHEAVLEAPPGAGKTTRVPLALLDEPWLEGQRILMLEPRRL
AARAAAERLAAELGETVGETVGYRIRLDSRVGPRTRIEVVTEGILTRRLQDDPALEGVGL
VIFDEFHERSLDADLALALTLNGRALLRDTPLRVLPMSATLEGERLAALLDDAPLVRSEG
RMYPVEIRWGRPLPPGERIEPRLLQTVLQALEDESGSLLVFLPGQAEIRRLHEQLGEVLA
GRAGILLCPLHGELDLAAQRAAIEPAPAGTRKVVLATNIAETSLTIDGVRVVVDAGLARV
PRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSQAQHEQLPAHDDAEILQA
DLAGLALQLARWGVEPAELAWLDAPPAAAFAQARELLARLGALAPNGSLSAHGQAMAGLP
AHPRIAHLLLRGQALGLGDLACDVAALLGERDILRGAGADLHSRLALLGGTERAGRGARG
GMQRARQLARQYRGLLPKGGQEAVADPAHPRWLGALLAFAYPDRIACQRRPGGGEYRLAN
GRAALFAEPDALMKHAWLVVAELGSRQGQREERIYLAAELDPALFETVLAEQVSVRDELD
WDEREGVLRAERQRRVGELVLERRALPGLDEAARGRALLGLVRRKGLELLPWTPELRQWQ
ARVALLRRLDLAEKGESDWPDLSGAALLASLEDWLAPYLGQVSRLSHFAALDLPGILRGL
LPWPLPQRLDELAPPAIAVPSGSRIRLDYAEEPPVLAVRLQELFGLAQTPRIAGGRLAVK
LHLLSPARRPVQVTQDLASFWANTYAEVKKDLKGRYPKHYWPDDPLIAEPTARARPRQ
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgctacccatagacgccgtcctgcccgccctgcgcgaggccctgtccctgcgc
cacgaggccgtgctcgaggcgccgcccggcgccggcaagaccacccgcgtgccgctggcc
ctgctcgacgagccctggctcgaagggcaacgcatcctgatgctcgaaccgcgccggctg
gccgcgcgggccgccgccgagcgcctggccgccgaattgggcgagacggtcggcgagacg
gtcggctaccgcatccgcctggacagccgggtcggcccgcgcacgcgcatcgaggtggtc
accgagggcatcctcacccgccgcctgcaggacgacccggcgctggagggcgtcggcctg
gtgatcttcgacgagttccacgagcgcagcctggacgccgacctggccctggcgctgacc
ctcaacggccgcgccctgctgcgcgacacgccgctgcgggtgctgccgatgtccgccacc
ctggagggcgaacggctcgccgcgctgctggacgatgcgccgctggtgcgcagcgagggg
cgcatgtatccggtggagatccgctgggggcgcccgttgccgcccggcgaacggatcgag
ccgcggctcctgcagacggtgctgcaggcgctggaggatgagtccggcagcctgctggtg
ttcctgcccggccaggcggagatccgccgcctccacgagcagctcggcgaggtcctggcc
gggcgcgccggcatcctgctctgcccgctgcacggcgaactggacctggccgcccagcgc
gccgccatcgagccggccccggccggcacgcgcaaggtggtgctggccaccaacatcgcc
gagaccagcctgaccatcgacggcgtgcgcgtggtggtcgacgcgggactggcgcgggtg
ccgcgcttcgaccccggcagcggcatgacccgcctggacacccagcgcatctcccgcgcc
tcggcgacccagcgcgccggccgtgccgggcgcctggagccgggcgtgtgctaccggctg
tggtcgcaggcgcagcacgaacaactgcccgcccacgacgacgcggagattctccaggcc
gatctcgccgggctcgccctgcaactggcgcgctggggcgtggaaccggccgaactggcc
tggctcgatgcaccgccggcggccgccttcgcccaggcccgcgaactgctggcgcggctc
ggcgcgctcgctcccaacggcagcctgagtgcccatggccaggccatggccggactgccg
gcgcatccgcgcatcgcccaccttctgctgcgcggccaggcgctgggcctcggcgatttg
gcctgcgacgtcgccgcgctgctcggcgagcgagacatcctgcgcggcgccggcgccgac
ctgcacagccggctggccctgctcggcggcacggagcgggccgggcgcggcgcccggggc
ggcatgcagcgcgcccgccagttggcccgccagtaccgtgggctgctgccgaaggggggg
caggaggcggtcgccgatcccgcgcatccgcgctggctgggggcgctgctggccttcgcc
tatccggaccgcatcgcctgccagcgccgccccggcggtggcgagtaccgcctggccaac
ggccgcgccgcactgttcgccgagccggatgcgctgatgaagcacgcatggctggtggtc
gccgaactgggtagccgccagggccagcgcgaagaacgcatctatctggccgccgaactc
gacccggcactgttcgagacagtgctcgccgaacaggtgagcgtgcgcgacgaactggac
tgggacgagcgcgagggcgtattgcgcgccgagcgccagcggcgggtcggcgagctggtg
ctggagcgtcgggcgctgccggggctcgacgaggcggcgcgcggccgggcgctgctcggc
ctggtgcggcgcaagggcctggaactgctgccctggacgcccgaactgcgccagtggcag
gcgcgggtggcgctcctgcgtcgcctcgatctggcggaaaagggcgaaagcgactggccg
gacctgtccggcgcggccctgctggcgagcctggaggactggctggcgccgtacctgggg
caggtctcgcggctcagccatttcgccgcgctggacctgcccggcatcctcaggggcttg
ctgccctggccgttgccgcagcgtctcgacgaactggcgccgccggccatcgccgtaccg
tccggctcgcgcatccgcctcgactacgccgaagagccgccggtgctcgccgtgcgcctg
caggagctgttcggcctggcgcagacgcctcgtatcgccggcgggcggctggcggtcaag
ctgcacctgctgtcgccggcgcgccggccggtgcaggtcacccaggatctggcgagcttc
tgggccaacacctacgccgaggtgaagaaggatctcaagggccgctatcccaagcactac
tggccggacgatccgctgatcgccgaacccaccgcccgcgccaggccgcggcagtag
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