Azotobacter vinelandii DJ: Avin_11290
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Entry
Avin_11290 CDS
T00885
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
avn
Azotobacter vinelandii DJ
Pathway
avn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
avn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Avin_11290 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
avn03019
]
Avin_11290 (rhlB)
Enzymes [BR:
avn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Avin_11290 (rhlB)
Messenger RNA biogenesis [BR:
avn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Avin_11290 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-ProteinID:
ACO77358
UniProt:
C1DPC6
LinkDB
All DBs
Position
complement(1076174..1077739)
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AA seq
521 aa
AA seq
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MPAAQPFARLASCFTLAAIHSSSIDEITVLKALKKLLGMGEQAQPPVAADMPAPATRSTA
PAAPSKPPRQKTKPPRSEGKPAGRKIVADKPVGERKGAGKPQVGRPRREPPPDKPAAEWK
LEDFVVEPVPGKTRFHDFDLDPRLMHAIHDVGFPYCTPIQAQVLGYTLKGRDAIGRAQTG
TGKTAAFLISIISQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDALALTRYTGLNVM
SFVGGMDFDKQLKQLEEKFCDILVATPGRLLDFNQRGEVHLDMVEVLVLDEADRMLDMGF
IPQVRQIIRQTPYKGERQTLLFSATFTEDVMNLAKQWTVDPAIVEIEPEHVASDSVEQHV
YAVAGSDKYRLLYNLVTRNNWERVMVFANRKDEVRRIEERLTKDGISAAQMSGDVPQHKR
IKVLEGFREGRIRVLVATDVAGRGIHVEGVSHVINYTLPEDPDDYVHRIGRTGRAGSKGT
SISFAGEDDAFALPPIEALLGRKIDCEIPPAELLQPVPRRS
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atcccggctgcgcagcccttcgcccgcctggcctcttgctttacactggcggcaatccat
tcctcatccatcgacgagataaccgtgctcaaggcactcaagaaacttctaggcatgggc
gaacaggcacaaccgcctgtcgccgccgacatgccagctcccgccacccgctccaccgct
cccgccgctccatccaagccgccccggcagaaaaccaagcccccccgcagcgaaggcaag
cccgccggcaggaaaatcgtcgccgacaagcccgtcggcgaacgcaagggcgccggcaag
ccccaggtcggacggccacggcgcgagccaccgccggacaagccggcggcggagtggaag
ctggaggacttcgtggtcgaacccgtgccgggcaagacccgtttccacgacttcgacctc
gacccgcggctgatgcacgccatccacgacgtcggcttcccctactgcacgccgatccag
gcccaggtgctcggctacaccctcaagggccgggacgccatcggccgcgcccagaccggc
accggcaagaccgcggccttcctgatctcgatcatcagccagttgctgcagaccccgccg
cccaaggagcgctacatgggcgagccgcgcgcgctgatcatcgcgccgacccgcgagctg
gtggtgcagatcgccaaggatgccctggcgctgacccgctacaccggcctcaacgtgatg
agcttcgtcggcggcatggacttcgacaagcagctcaagcaactggaggagaagttctgc
gacatcctggtggccacccccggccgcctgctggacttcaaccagcgcggcgaggtgcat
ctggacatggtcgaggtgctggtgctggacgaggccgaccgcatgctcgacatgggcttc
attccgcaggtgcggcagatcatccgccagaccccgtacaagggcgaacggcagaccctg
ctgttctcggcgaccttcaccgaggacgtgatgaacctggccaagcagtggacggtcgat
ccggcgatcgtcgagatcgaaccggagcatgtcgccagcgacagcgtcgagcagcacgtc
tacgcggtggccggcagcgacaagtaccggctgctgtacaacctggtgacccgcaacaac
tgggaacgggtgatggtgttcgccaaccgcaaggacgaggtgcggcgcatcgaggagcgc
ctgaccaaggacggcatcagcgccgcgcagatgtccggcgacgtgccgcagcacaagcgc
atcaaggtcctggaaggcttccgcgagggccgcatccgcgtgttggtggccaccgacgtg
gccggccgcggcatccatgtcgagggtgtcagccacgtgatcaactacaccctgccggaa
gatccggacgactacgtgcaccgcatcggccgcaccggccgggccggctccaaaggcacc
tcgatcagcttcgccggcgaggacgacgccttcgccctgccaccgatcgaggcgctgctc
gggcgcaagatcgactgcgagatcccgcccgccgaactgctccagccggtgccgcggcgc
tcctga
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