Azotobacter vinelandii DJ: Avin_11550
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Entry
Avin_11550 CDS
T00885
Name
(GenBank) ATP-dependent dsDNA exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
avn
Azotobacter vinelandii DJ
Brite
KEGG Orthology (KO) [BR:
avn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avn03400
]
Avin_11550
DNA repair and recombination proteins [BR:
avn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Avin_11550
Archaeal homologous recombinant proteins
Avin_11550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
T2SSE
AAA_21
AAA_15
nSTAND3
cobW
NACHT
ABC_ATPase
AAA_22
NTPase_1
GTP_EFTU
Motif
Other DBs
NCBI-ProteinID:
ACO77384
UniProt:
C1DPF2
LinkDB
All DBs
Position
1105374..1108787
Genome browser
AA seq
1137 aa
AA seq
DB search
MKILSLRLKNLNSLKGEWKIDFREAPFRDNGLFAITGPTGAGKTTLLDAICLALYHRTPR
MDRLSKESNELMTRHTAECLAEVEFEVKGRGYRAFWSQRRARDRADGALQMPRVELAAAD
GSILADKVGDKLARIEALTGLDFARFTRSMLLAQGGFAAFLEADAKSRAELLEQLTGTDI
YGRISQRVFEHAREAKVALERLQERAAGVELLDDGERRALEERAAVLAAEEAPLLARQGE
LQARRQWRAELEQAELRCREAGEASRRAGLALAEAAPQLARLAAGEPAAALLPAHRDWQQ
ACQQLEQGERNLTQIRAERRQAGEAVGLHLWQAGQFARRIAVAAQEQARRLHSQHRQLAE
QLAEQPRYAELGERLGAWRERFECHRQWQEEIAALQDRQRNEQAALAELGERQRQAQEHL
RRRQAELDSACAAERQARESLDTLLQGEPESALREHWRQAQSRRNLLQQLEQNARQRGSG
EARLAAIDAELADGRRRHGEQQARLELLRQRYRDSQALVAARKKLLEQERRILDLEAQRS
QLQPGEPCPLCGSREHPAVDTYRALDLSAGERDLQAAEAELEALLREGEAARDALAVLDA
ELGALRRRREQDGDELRRQREQWRQLCAELGTEPIDLAAIRDALDERLAAFEGRLQQLEL
GRQAVAQSAEARQRMERACEQDGQQVRLLEERLLASRGRAQELDERLRQCRELLSRGEQA
LAEELAAFGHPLPDDGAAWLARRQGEWQDWQRRQNRLQQLERERLEQSALVEAAEKQAAL
WQGRWSELGEAGRTAPAECVDAQDALAGAEAGLDAARRRANELDGRLLSLEEQVRQQRRH
LEACGAHWRAQLARSPFADEAAFRAALLDDAQRAALQDLKARLERARTEALALLAAAEGR
LAGLLAEPRTTASGEELERQAQELAGRLRSLAEEQGAIRATLSADDERRQGRQALFAEIE
RCRAEYDLWQHLNGLIGSADGAKYRKFAQGLTLDHLVWLANRQLARLHGRYQLARRSDGE
LELEVVDTWQGDATRDTRTLSGGESFLVSLALALALSDLVSHKTSIDSLFLDEGFGTLDG
ETLEVALDALDSLNASGKTIGVISHVEALKERIPVQLRVSKGVGMGYSALERRFALS
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
gtgaagatcctcagcctgcgcctgaagaacctcaactcgctgaagggcgagtggaagatc
gattttcgcgaagcgccgttcagggacaacggcctgttcgccatcaccgggccgaccggc
gccggcaagaccaccctgctcgacgccatctgcctggctctctatcaccgcacgccgcgc
atggaccgtttatccaaggagtccaacgagctgatgacccggcacaccgccgagtgcctg
gccgaggtggaattcgaggtgaagggccggggctaccgcgccttctggagccagcgccgc
gcccgtgaccgggccgacggcgcgctgcagatgcccagggtcgagctggccgcggcggac
ggcagcatcctcgccgacaaggtcggcgacaagctggcgcggatcgaggcgctcaccggc
ctcgacttcgcgcgtttcacccgctccatgctgctcgcccagggcggtttcgccgccttt
ctcgaggccgatgcgaagagccgcgccgaacttctggagcagctcaccggcaccgacatc
tacgggcggatctcccagcgggtgttcgaacatgcccgcgaggcgaaggtggccctcgaa
cggctgcaggagcgggccgccggagtcgagctgctggatgacggggagcgccgagccctg
gaagagcgggccgccgtgctggccgccgaggaggcgccgttgctggcgcgccagggcgag
ctgcaggcccggcgccagtggcgcgcggagctggagcaggcggagctgcgctgccgggag
gcgggggaggcgagtcgacgagccggcttggcgctggccgaagccgcgccgcaactggcc
cggctggcggccggcgagccggccgccgcgttgctgcctgcgcatcgggactggcagcag
gcgtgccagcaactggagcagggcgagcgcaatctgacgcagatccgtgccgagcggcgc
caggccggcgaggcggtcggcctgcatctgtggcaggccggccaattcgcccggcggatc
gccgtggcggcgcaggagcaggcccggcggttgcactcgcagcaccggcaactggccgag
caattggccgaacagccacggtatgccgagctgggcgagcgcctcggtgcctggcgcgaa
cgattcgaatgccaccgccagtggcaggaagagatcgccgcgctccaggaccggcagcga
aacgaacaggccgcgctcgccgagctgggcgaaaggcagcggcaggcgcaggagcatctg
cggcgccggcaggccgagctggacagcgcctgcgcggccgaacgccaggcccgcgagagt
ctggacacgctgctgcagggcgagcccgaaagcgcgctgcgcgaacactggcggcaggcg
cagtcccgccgcaacctgctgcagcaactggagcagaatgcccgccagcgcggcagcggc
gaagcgcgtctggccgccatcgacgccgaactggccgacggtcggcggcggcatggcgag
cagcaggcgcgtctcgaattgctgcgccagcgttacagggattcgcaggcgctggtcgcg
gcgaggaaaaaactgctggagcaggagcggcgcattctcgatctggaagcccagcggagc
cagttgcagccgggcgagccctgcccgctgtgcggctcccgcgagcatccggccgtcgac
acctaccgggcgctggacctttccgccggcgaacgggacttgcaggccgccgaggcggag
ctggaggcgctactccgcgaaggcgaggcggcacgggacgcgctggccgtgctcgacgcc
gaactcggggcgctgcgccggcgccgcgaacaggacggggacgagttgcgccggcagcgt
gaacagtggcggcaactgtgtgcggagctgggcacggagccaatcgatctggcggccatc
cgggatgcgctggacgaacggctggcggcattcgaagggcgtctgcaacagctcgaactc
ggccggcaggccgtggcgcaatccgccgaggcgcgccagcggatggagcgcgcttgcgag
caggatggtcagcaggtgcggttgctcgaagaacgcctgctcgccagtcgcggtcgcgcg
caggagctggacgaacgcttgcgccagtgcagggagctgttgagtcgcggcgagcaggcc
ctggccgaggaactggccgccttcggccatccgctgccggacgacggcgcggcctggctc
gcgcggcggcagggcgagtggcaggactggcagcggcggcagaaccgtctgcagcaactg
gagcgcgagcggctggagcagagcgccctggtcgaggccgccgagaagcaggcggcgctc
tggcaaggacgctggagcgaactgggcgaagccgggcggaccgccccggccgaatgcgtc
gatgcccaggacgccctcgccggggcggaagccggactggacgctgcccggcgccgggcc
aacgaactggacgggcgcctgctgtcgctggaagaacaggtacggcagcagcgccgccat
ctggaggcctgcggcgcgcactggcgggcgcaattggcgcggagtccgttcgccgacgag
gcggcattccgcgcggcgctgctcgacgatgcccagcgtgccgccctgcaggacctcaag
gcgcgtctggaacgggcgcggaccgaggcactggccctgctcgccgccgccgaggggcgg
ttggccggcctgctggccgaaccccggaccacggccagcggcgaggaactggagcgacag
gcgcaggaactggccgggcggctgcggagcctggccgaggagcagggggcgatccgcgcc
acgctgtccgccgacgacgagcgccggcaaggccggcaggcgctgttcgcggagatcgag
cgctgccgggccgagtacgatctctggcagcacctcaacgggctgatcggctcggccgac
ggcgccaagtaccgcaagttcgcccagggcctgaccctcgaccatctggtctggctggcc
aaccgccaactggcgcgtctgcacggccgttaccaactggcacgacgttccgacggcgaa
ctggagctggaggtcgtcgacacctggcagggcgacgcgacccgcgacacccgcaccctg
tccggcggcgagagcttcctggtcagcctggccctggccctggcgctgtccgacctggtc
agtcacaagaccagcatcgactcgctgtttctcgacgagggcttcggcaccctcgacggc
gagaccctggaggtggccctggacgccctggacagcctcaacgccagcggcaagaccatc
ggcgtgatcagccacgtcgaagcgctcaaggagcgcatcccggtgcagctcagggtgagc
aagggcgtggggatgggctacagcgccctggaaaggcgcttcgccctgtcctga
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