Azotobacter vinelandii DJ: Avin_14570
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Entry
Avin_14570 CDS
T00885
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
avn
Azotobacter vinelandii DJ
Pathway
avn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
avn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Avin_14570 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
avn03400
]
Avin_14570 (mfd)
Enzymes [BR:
avn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Avin_14570 (mfd)
DNA repair and recombination proteins [BR:
avn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Avin_14570 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
DUF7267
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ACO77673
UniProt:
C1DR00
LinkDB
All DBs
Position
complement(1435934..1439383)
Genome browser
AA seq
1149 aa
AA seq
DB search
MSVLRFPTLPAAPGKQHWGNLPGTALPLAIAEAASAAAKRFTLLLTADSLSAERLEQDLR
FFAPELPVLQFPDWETLPYDLFSPHQDIVSQRIASLYRLPELNHGVLVVPITTALHRLAP
KPFLLGSSLVLDVGQRLDVEQMRQRLEAAGYRCVETVYEHGEFAVRGALIDLFPMGSERP
YRIDLFDDEIETLRTFDPETQRSIDKVESVRLLPAREFPLRKEAVAAFRARFRERFDVDF
RRCPIYQDLASGITPAGIEYYLPLFFEETATLFDYLPSTTQVFSLPGIEQAAEHFWSDVR
NRYEERRLDPERPLLPPAELFLPVEDCFARLKSWPRAIVSAEEIEPGVGRERLPARALPS
LAIDARAGQPLAALAGFLDGFPGRVLFTAESAGRREVLLELLARLNLRPQSVDGWPGFLA
ATERLAIAIAPLDEGLLLDEPALALIAESQLFGQRVMQRRRREKARDGGDNVIKHLTELR
EGAPVVHIDHGIGRYRGLVTLEVEGQAAEFLMLEYAEEAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEQWQRAKRKAAEQVRDVAAELLDIYARRAARAGFAFKDPATDYETFSASFP
FEETPDQQAAIDAVRTDMLAPRPMDRLICGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPT
TLLAQQHYNSFRDRFADWPVKVEVMSRFKSAKEVEGAIAALAEGKIDIVIGTHKLLQDDV
SFKNLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIAT
PPARRLSVRTFVMEQQNTLIREALLRELLRGGQVYYLHNEVKTIEKCARELAELVPEARI
AIGHGQMRERELEQVMGDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRKQMTEDAQKRLEAIAGAQDLGAGFVLATHDLEIRGAGEL
LGEGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPDINLRVPALIPEDYLP
DVHARLILYKRIASASAEEELNELQVEMIDRFGLLPEPTKHLMRLTRLKLQAERLGIAKI
DAGPQGGRIEFAAHTCVDPLVLIKLIQSQPSRYKFEGATLLRFQIPMERPEERFNTLEAL
LERLTPPSA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtattgcgttttccgaccctgccggcggcccccggcaaacaacactggggcaac
ctgccgggcacggcgcttcccctggcgatcgccgaagccgccagcgccgcggccaagcgc
ttcaccctgctcctgaccgccgacagcctgagcgccgaacgcctggaacaggatctccgc
ttcttcgccccggagcttccggtgctgcaattcccggactgggaaaccctgccctacgac
ctcttctcgccgcaccaggatatcgtctcgcagcgcatcgccagcctctaccgcctgccg
gaactgaaccacggcgtgctggtggtgccgatcaccaccgccctgcaccgtctggcgccg
aagcctttcctgctgggtagcagcctggtgctggacgtcggccagcggctcgatgtggaa
cagatgcgccagcgcctggaagcggccggctaccgctgtgtggaaaccgtctacgaacac
ggcgaattcgccgtgcgcggcgccctgatcgatctctttcccatgggcagcgagcgcccc
taccgcatcgacctgttcgacgacgagatcgagaccctgcgcaccttcgacccggagacg
cagcgctcgatcgacaaggtcgagtcggtacgtctgctgccggcccgcgaattcccgctg
cgcaaggaagcggtcgccgcctttcgcgcccgcttccgcgagcgtttcgacgtcgacttc
cgccgctgcccgatctaccaggacctcgccagcggtatcaccccggccggcatcgagtac
tacctgccgttgttcttcgaggaaaccgccaccctcttcgactacctgccgtccaccacc
caggtgttctccctgcccggcatcgaacaggccgccgagcacttctggagcgacgtgcgc
aaccgctacgaggagcgccgcctcgatccggaacggccgctgctgccgcccgccgagctg
ttcctgccggtggaggactgtttcgcacgcctgaagagctggccccgggcgatcgtctcg
gccgaagagatcgaacccggtgtcggccgcgagcgcctgcccgcacgcgcgctgccgtcg
ctggcgatcgacgccagggctggccagccgctggcggccctggccggtttcctcgacggc
ttcccgggccgcgtgctgttcaccgccgagtcggccggacgccgcgaagtgcttctggaa
ctgctcgcacgcctgaacctgcgcccgcagagcgtcgacggctggccgggctttctcgcc
gccacggagcgcctggccatcgccatcgccccgctggacgagggcctgctgctcgacgag
cccgccctggcattgatcgccgagagccaattgttcggtcagcgggtgatgcagcgccgg
cgccgggaaaaggcgcgcgacggcggcgacaacgtcatcaagcacctcaccgaactgcgc
gagggtgcgcctgtggtgcatatcgaccacggcatcggccgctaccgcgggctggtcacc
ctggaggtcgagggccaggccgccgagttcctcatgctggagtacgccgaggaagccaag
ctctacgtaccggtggccaacctgcatctgatcgcccgctacaccggcagcgacgacgcc
ctcgccccgctgcaccggctgggctcggagcaatggcagagggccaagcgcaaggccgcc
gagcaggtccgcgacgtcgccgccgagctgctcgacatctatgcccggcgcgccgcccgc
gcgggcttcgccttcaaggacccggccaccgactacgaaaccttcagcgccagcttcccc
ttcgaggaaacccccgaccagcaggccgccatcgacgcggtgcgcaccgacatgctggcg
ccccggccgatggatcgcctgatctgcggcgacgtcggcttcggcaagaccgaagtggcc
atgcgcgccgccttcatcgccgtgcatagcggcaggcaggtcgcggtgctggtgccgacc
accctgctcgcccagcagcactacaacagctttcgcgaccgcttcgccgactggccggtg
aaggtcgaggtgatgagccgcttcaagtcggccaaggaagtcgaaggcgccatcgccgca
ctggccgaaggcaagatcgacatcgtcatcggcacccacaagctcctgcaggacgacgtc
agcttcaagaacctgggcctcgccatcatcgacgaggaacaccgcttcggcgtgcgccag
aaggagcagctcaaggccttgcgcagcgaggtggacatcctcaccctgaccgccacgccg
atcccgcgcaccctgaacatggccgtcgccggcatgcgcgatctgtcgatcatcgccacc
ccgccggcgcgccgactgtcggtacgcaccttcgtcatggagcagcagaacaccctgatc
cgcgaggcgctgctgcgcgagctgctgcgcggcggccaggtttactacctgcacaacgag
gtgaagaccatcgagaaatgcgcccgcgaactggccgaactggtgcccgaggcacgcatc
gccatcggtcacgggcagatgcgcgagcgcgaactggaacaggtgatgggcgacttctac
cacaagcgcttcaacgtactggtggcctcgaccatcatcgagaccggcatcgacgtgccc
agcgccaacaccatcgtcatcgaacgcgccgacaagttcggcctggcccagttgcaccag
ttgcgcggccgggtcggtcgcagccaccaccaggcctatgcctacctgctcaccccgccg
cgcaagcagatgaccgaggacgcgcagaagcgcctggaagccatcgccggcgcccaggac
ctcggcgccggcttcgtcctggccacccacgacctggagatccgcggcgccggcgaactg
ctcggcgagggccagagcggccagatccaggcggtcggcttcaccctctacatggaaatg
ctcgagcgcgcggtcaaggccatccgcaagggcgagcagccgaacctcgagcagccgctg
ggcggcggcccggacatcaacctgcgggttccggcgctgatccccgaagactacctgccg
gacgtgcacgcccgcctgatcctctacaagcgcatcgcctcggcgagcgcagaggaagaa
ctcaatgaactgcaggtggagatgatcgaccgcttcggtctcctgcccgagccgaccaag
cacctgatgcgcctgacccgcctgaagctgcaggcggaacggctcggcatcgccaagatc
gatgccggcccccagggcggacgcatcgaattcgccgcccacacctgcgtcgatccgttg
gtgctgatcaagctgatccagagccagccgagccgctacaagttcgaaggcgccaccctg
ctcaggttccagatacccatggaacgcccggaagaacgcttcaacaccctcgaggcgctg
ctcgagcgcctgactccgccatccgcgtaa
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integrated database retrieval system
